PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_00707_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | SRS | ||||||||
Protein Properties | Length: 213aa MW: 23519.4 Da PI: 8.5598 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 101.1 | 2e-31 | 18 | 77 | 3 | 62 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaassk 62 g+++CqdCGnqakkdC+++RCRtCC+s+gf+C+th+kstWvpa++rr+r++++++++ Cotton_A_00707_BGI-A2_v1.0 18 GGGTRCQDCGNQAKKDCNYMRCRTCCRSKGFECQTHIKSTWVPAYRRRHRHHHQHQQQPL 77 57789********************************************96665554332 PP | |||||||
2 | DUF702 | 75.3 | 1.8e-23 | 85 | 149 | 93 | 154 |
DUF702 93 saeskkeletsslPeevsseavfrcvrvssvdd...geeelaYqtavsigGhvfkGiLydqGlee 154 ++++++ le+ ++P+ev s+a frcvrv s++d g +++aY+tav igGhvfkGiLydqG+++ Cotton_A_00707_BGI-A2_v1.0 85 RENPSSGLEVGDFPAEVTSPATFRCVRVCSMEDttaGGDQYAYRTAVMIGGHVFKGILYDQGPDQ 149 456677889999*********************6666789***********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.8E-50 | 20 | 148 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 3.1E-27 | 23 | 64 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 9.6E-23 | 97 | 147 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MNEGVMMMSS RGYGGGTGGG TRCQDCGNQA KKDCNYMRCR TCCRSKGFEC QTHIKSTWVP 60 AYRRRHRHHH QHQQQPLQHN PKRLRENPSS GLEVGDFPAE VTSPATFRCV RVCSMEDTTA 120 GGDQYAYRTA VMIGGHVFKG ILYDQGPDQG HYSLGECSSR ETPLQQPNQA LTMATANTAT 180 ASATETLLPF AYPSPFNAAF MSAGTQFFLH PKS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX579311 | 1e-100 | JX579311.1 Gossypium hirsutum clone NBRI_GE11521 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016714518.1 | 1e-161 | PREDICTED: protein SHI RELATED SEQUENCE 3-like | ||||
Swissprot | Q9SD40 | 4e-53 | SRS1_ARATH; Protein SHI RELATED SEQUENCE 1 | ||||
TrEMBL | A0A1U8LM36 | 1e-160 | A0A1U8LM36_GOSHI; protein SHI RELATED SEQUENCE 3-like | ||||
TrEMBL | A0A2P5XRE8 | 1e-160 | A0A2P5XRE8_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.005G247100.1 | 1e-152 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9188 | 26 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G51060.1 | 4e-47 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
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