PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_00602_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 281aa MW: 32706.5 Da PI: 8.6597

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_00602_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	150.5	7.9e-47	18	144	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 pGfrFhPt+eel+ +yLk+ + +kkl+ ++i +iy+++PwdLp k +e+ewyfF++rd+k+ +g r+nr+t++g+Wka Cotton_A_00602_BGI-A2_v1.0 18 PGFRFHPTEEELLEFYLKNMIYDKKLRY-DIIGYRNIYHHDPWDLPGLSKIGEREWYFFVPRDRKHGSGGRPNRTTANGFWKA 99 9************************9.99***********8778899************************** PP NAM 86 tgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 tg+d++++s ++ +glkktLvfykgrap+g ktdWvm+eyrl Cotton_A_00602_BGI-A2_v1.0 100 TGSDRKIVSLsdPKRIIGLKKTLVFYKGRAPRGCKTDWVMNEYRL 144 ***997666778*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	53.553	16	162	IPR003441	NAC domain
SuperFamily	SSF101941	2.62E-56	17	162	IPR003441	NAC domain
Pfam	PF02365	3.2E-25	18	144	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009965	Biological Process	leaf morphogenesis
GO:0010200	Biological Process	response to chitin
GO:0045792	Biological Process	negative regulation of cell size
GO:0048281	Biological Process	inflorescence morphogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MSSLSSMDDN ATAKIELPGF RFHPTEEELL EFYLKNMIYD KKLRYDIIGY RNIYHHDPWD 60 LPGLSKIGER EWYFFVPRDR KHGSGGRPNR TTANGFWKAT GSDRKIVSLS DPKRIIGLKK 120 TLVFYKGRAP RGCKTDWVMN EYRLPDGCSL PKDIVLCKVY RKATSLKVLE QRAAMEEELK 180 AIKNTSPSSP LSSMETVSFC SPKEAQVPAP QMFFKKENEE EQEQETMVEK KRCLQLPLDS 240 EKLPELQMPK VLSDWTQDQF WTQLNSPWFQ NLTTYANILN F

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-46	10	162	8	168	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC847197	0.0	KC847197.1 Gossypium hirsutum NAC domain protein NAC20 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017633109.1	0.0	PREDICTED: NAC domain-containing protein 35-like
Swissprot	Q10S65	2e-95	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A1U8MN14	0.0	A0A1U8MN14_GOSHI; NAC transcription factor 29-like
STRING	Gorai.005G257800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3899	28	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	1e-116	NAC domain containing protein 36

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]