PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_00580_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 295aa    MW: 32621.4 Da    PI: 8.7217
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_00580_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_147.15.2e-15214271461
                                 XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                      bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                                  +++rr++kNRe+A rsR+RK+a++ eLe  v  Le+eN +L+ e  el+ke  k  +
  Cotton_A_00580_BGI-A2_v1.0 214 QQKQRRMIKNRESAARSRERKQAYTVELESMVTHLEEENARLRREEAELNKERFKQLM 271
                                 689******************************************9999999766555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1708.9E-15208273No hitNo description
SMARTSM003388.3E-14211275IPR004827Basic-leucine zipper domain
PfamPF001701.4E-13213273IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.047213265IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.7E-11215267No hitNo description
CDDcd147074.19E-21215262No hitNo description
PROSITE patternPS000360218233IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MASSKLITTT SQTNPDVTRQ PSLCSSLSTL FADLQNQQNN NENRSQNCVG SMSMDDLLKN  60
IYPSTPPPPP STTGNTGSDA HHAQFLGGSI SREGSFSLPK DVASKSVDEV WKEIVAGGGD  120
QRQEGQLEEM TLEDFLTKAG AVREEDVSRG VVNQVGAGVF HVEPAVINGG GSQFSTFGNK  180
GGVDHQRLVV VPTGGGGRGK RRAVEEPPLD KATQQKQRRM IKNRESAARS RERKQAYTVE  240
LESMVTHLEE ENARLRREEA ELNKERFKQL MKNLVPVDEK QRPRRVIRRA HSMEW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017632102.10.0PREDICTED: G-box-binding factor 4-like
TrEMBLA0A2P5YLF00.0A0A2P5YLF0_GOSBA; Uncharacterized protein
STRINGGorai.005G259700.11e-171(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16538611
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44080.12e-36bZIP family protein