PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_00517_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 299aa    MW: 32484.4 Da    PI: 4.5784
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_00517_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.84.1e-05272295123
                                 EEETTTTEEESSHHHHHHHHHH.T CS
                     zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                                 ++C+ Cg+sF +   L++H +  H
  Cotton_A_00517_BGI-A2_v1.0 272 FPCKSCGRSFGSENALQSHSKAkH 295
                                 89*****************88777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF692037.32E-5399IPR024057Nucleoplasmin core domain
SMARTSM003550.0052272295IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.489272299IPR007087Zinc finger, C2H2
PROSITE patternPS000280274295IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MEFWGVEVKS GQNFEVELED DGSRILHLSQ VALGEGTGDN KKEKGKETIC LYLKFKNQKF  60
VVGTLSQEKC PQIALDLVLH DKFELFHTWK NGSVYVTGYY VDTSQGSDTE SEGELPEPTM  120
NLVKSEPAAS DPTTTKQVKI VEPKKDDDSS DEDEEDSSAE DEESSEEQEP RMLVNGENDT  180
DDADSDEDDS DEESLDEDQK TPEKAGPSKK RPAESSKKTP APEKKAKLVT PQKTDGKKAG  240
GHTATPHPSK KAGKTSAAAA QVKQTPKSGG SFPCKSCGRS FGSENALQSH SKAKHGTQA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9644338e-59JX964433.1 Gossypium hirsutum clone NBRI_TRANS-702 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017617287.10.0PREDICTED: histone deacetylase HDT1-like isoform X1
TrEMBLA0A1U8MWT20.0A0A1U8MWT2_GOSHI; histone deacetylase HDT1-like isoform X4
STRINGEOY081101e-143(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20272667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.12e-26histone deacetylase 2C