PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_00507_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 226aa    MW: 26387.5 Da    PI: 6.2961
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_00507_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.92.3e-2065119256
                                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                    Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                 +k+ ++t++ql+ Le+ F+++++++ +++ +L+k+lgL+ rq+ vWFqNrRa++k
  Cotton_A_00507_BGI-A2_v1.0  65 KKKKRLTSDQLDSLERSFQEENKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWK 119
                                 78889*************************************************9 PP
2HD-ZIP_I/II119.61.6e-3865156192
                 HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 
                                 +kk+rl+++q+ +LE+sF+ee+kL+p+rK++l++eLglqprq+avWFqnrRAR+k+kql + y++Lk++yd +  e+++L++e
  Cotton_A_00507_BGI-A2_v1.0  65 KKKKRLTSDQLDSLERSFQEENKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKAKQLQHSYNTLKHEYDVIYMEKQMLQDE 147
                                 59********************************************************************************* PP

                 HD-ZIP_I/II  84 veeLreelk 92 
                                 v eL+  l+
  Cotton_A_00507_BGI-A2_v1.0 148 VMELKGMLM 156
                                 ****98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.56E-2053122IPR009057Homeodomain-like
PROSITE profilePS5007118.09161121IPR001356Homeobox domain
SMARTSM003893.6E-1963125IPR001356Homeobox domain
PfamPF000461.1E-1765119IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-2167128IPR009057Homeodomain-like
CDDcd000864.06E-1769122No hitNo description
PRINTSPR000313.5E-592101IPR000047Helix-turn-helix motif
PROSITE patternPS00027096119IPR017970Homeobox, conserved site
PRINTSPR000313.5E-5101117IPR000047Helix-turn-helix motif
PfamPF021834.9E-7122155IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MDWNGTIRPF ISRLEPSLNF PYNYNYNQYP GVEDMNNQGF EEAGNGLVPD LNMNSFKNNG  60
KGNNKKKKRL TSDQLDSLER SFQEENKLDP DRKMKLSKEL GLQPRQIAVW FQNRRARWKA  120
KQLQHSYNTL KHEYDVIYME KQMLQDEVME LKGMLMEQAT RNQVSTVYKE ISGGETIESS  180
SIRSSNKPSI AGNDYDPIVE CNNIFNKDEN NPVSTHYWDI QLPSYP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113121RRARWKAKQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5843761e-38JX584376.1 Gossypium hirsutum clone NBRI_GE17666 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017622718.11e-169PREDICTED: homeobox-leucine zipper protein ATHB-22-like
SwissprotQ9LZR02e-47ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A1U8MYU51e-165A0A1U8MYU5_GOSHI; homeobox-leucine zipper protein ATHB-22-like
STRINGGorai.002G244000.11e-112(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16602888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.12e-42homeobox 51
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]