PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_00505_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 218aa MW: 25566.8 Da PI: 9.2424 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.3 | 1.5e-19 | 57 | 110 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t++ql+ Le+ F+++ +++ +++ +L+++lgL+ rq+ vWFqNrRa++k Cotton_A_00505_BGI-A2_v1.0 57 KKKRLTSDQLDSLEKSFQEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWK 110 56679************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 118.6 | 3.4e-38 | 57 | 147 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 kk+rl+++q+ +LE+sF+ee kL+p+rK++l+reLglqprq+avWFqnrRAR+k+kqlE+ y++Lk+++da+++e+++L++ev Cotton_A_00505_BGI-A2_v1.0 57 KKKRLTSDQLDSLEKSFQEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWKAKQLERLYDSLKQEFDAISREKQKLQDEV 139 9********************************************************************************** PP HD-ZIP_I/II 85 eeLreelk 92 +L+ l+ Cotton_A_00505_BGI-A2_v1.0 140 IKLKGILR 147 ***97665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.27E-19 | 50 | 114 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.346 | 52 | 112 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.8E-17 | 55 | 116 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.52E-15 | 57 | 113 | No hit | No description |
Pfam | PF00046 | 6.3E-17 | 57 | 110 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 8.1E-21 | 62 | 111 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.7E-5 | 83 | 92 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 87 | 110 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.7E-5 | 92 | 108 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 7.4E-9 | 112 | 146 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010434 | Biological Process | bract formation | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MDWNDTFRPF VSRPEPSLNF LYSMEMKQHQ GFMEVGNEMV LPGLNKNSFN NNVNQDKKKR 60 LTSDQLDSLE KSFQEEIKLD PDRKMKLSRE LGLQPRQIAV WFQNRRARWK AKQLERLYDS 120 LKQEFDAISR EKQKLQDEVI KLKGILREQV TRNQVSTVYT EISGEETVES TSIRSSNKPK 180 IAGNNHHPHP ACNYLFNVDE YNPVSSPYWG TVQLPSYP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 104 | 112 | RRARWKAKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00486 | DAP | Transfer from AT5G03790 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX587979 | 5e-75 | JX587979.1 Gossypium hirsutum clone NBRI_GE22268 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017622575.1 | 1e-150 | PREDICTED: homeobox-leucine zipper protein ATHB-22-like | ||||
Swissprot | Q9LZR0 | 5e-53 | ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | A0A1L6KYG4 | 1e-146 | A0A1L6KYG4_GOSHI; HD-Zip I TF | ||||
TrEMBL | A0A2P5RT80 | 1e-146 | A0A2P5RT80_GOSBA; Uncharacterized protein | ||||
TrEMBL | A0A2P5WN57 | 1e-146 | A0A2P5WN57_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.002G244200.1 | 1e-144 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1660 | 28 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 2e-55 | homeobox 51 |
Publications ? help Back to Top | |||
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