PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_00477_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 262aa    MW: 28920.9 Da    PI: 8.0044
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_00477_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.11.5e-161462148
                                TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                                +g+W++eEd  l+d ++++G+g +W + +++ g++R++k+c++rw++yl
  Cotton_A_00477_BGI-A2_v1.0 14 KGPWSPEEDAMLKDFIHKHGTGgNWISLPQKAGLRRCGKSCRLRWLNYL 62
                                79*********************************************97 PP
2Myb_DNA-binding39.99.7e-1369111246
                                 SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
             Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                 g+++ +Ed ++ ++++  G++ W+ Ia+ ++ gRt++++k++w++
  Cotton_A_00477_BGI-A2_v1.0  69 GKFSDDEDRIICNLFASIGSR-WSIIAANLP-GRTDNDIKNYWNT 111
                                 89*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.958962IPR017930Myb domain
SuperFamilySSF466891.23E-2611109IPR009057Homeodomain-like
SMARTSM007174.3E-121364IPR001005SANT/Myb domain
PfamPF002491.9E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-231569IPR009057Homeodomain-like
CDDcd001678.16E-101662No hitNo description
PROSITE profilePS5129422.59963117IPR017930Myb domain
SMARTSM007175.5E-1267115IPR001005SANT/Myb domain
PfamPF002491.9E-1169111IPR001005SANT/Myb domain
CDDcd001674.47E-970113No hitNo description
Gene3DG3DSA:1.10.10.604.9E-2370117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MGRAPCCDKS NVKKGPWSPE EDAMLKDFIH KHGTGGNWIS LPQKAGLRRC GKSCRLRWLN  60
YLRPNIKHGK FSDDEDRIIC NLFASIGSRW SIIAANLPGR TDNDIKNYWN TKLKKKLFGM  120
VPHSYSSSSF SNITTAGSVL QSQQQRGFSA NRLGRNKDSE FGYGGGSGEN HGDQQIGNLE  180
SCFYNEGDKN YHHNLMDSSG DVANGFSSSV GSIGSTFDSN FLYGETTSLD YGIEGINQQI  240
SSTSSSCEGF GFYQHNANDY PC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24141177108B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ1156440.0HQ115644.1 Gossypium hirsutum DNA-binding transcription factor blind 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017622523.10.0PREDICTED: transcription factor MYB36
TrEMBLE7D5Q40.0E7D5Q4_GOSHI; DNA-binding transcription factor blind 2
STRINGGorai.002G246700.11e-164(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.15e-75myb domain protein 36