PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_00474_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family E2F/DP
Protein Properties Length: 379aa    MW: 41986 Da    PI: 7.4065
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_00474_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP67.91.3e-21101209271
                     E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse............................................dv 39 
                                 ++++Lr++++k   ++ek+e+ g++t+nev   L  +                                            d+
  Cotton_A_00474_BGI-A2_v1.0 101 SGRGLRQFSMK---VCEKVESkGRTTYNEVRWFL--KvalsfiskpmsisesesfsqvadelvaeftdpgnniaspdqqqyDE 178
                                 689********...****9999********9999..445999999************************************** PP

                     E2F_TDP  40 knkrRRiYDilNVLealnliekkekneirwkg 71 
                                 kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  Cotton_A_00474_BGI-A2_v1.0 179 KNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 209
                                 **********************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.3E-4296215IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.7E-31100209IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023194.2E-21102209IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.5E-17103128IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.5E-17155210IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144581.56E-43214317IPR014889Transcription factor DP, C-terminal
SMARTSM011382.8E-73216377IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440745.49E-43216329No hitNo description
PfamPF087813.0E-41217330IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MVTGSNSVQN HNHQEDGDQN RTTIGASRSW GTTVSGQSVS TSGSVGSPSS RSELAMATPA  60
SENTFLRLNH LDVHGDDAGS QGAVGSKKKK RGQRAVGGDK SGRGLRQFSM KVCEKVESKG  120
RTTYNEVRWF LKVALSFISK PMSISESESF SQVADELVAE FTDPGNNIAS PDQQQYDEKN  180
IRRRVYDALN VLMAMDIISK DKKEIQWKGL PRTSLSDIED LKTERLGLRN RIEKKAAYLH  240
ELEEQFVGLQ NLIQRNEQLY SSGNRPNGGV ALPFILVQTR PHATVEVEIS EDMQLVHFDF  300
NSTPFELHDD NYVLKAMKFC KRPGSDEMAH NFSADGEGSS MSAIYQQQIV PPPMTNTPGR  360
PPTSPPLPGI LKARVKHEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B1e-3494214193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017617922.10.0PREDICTED: transcription factor-like protein DPB isoform X1
SwissprotQ9FNY21e-162DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A1U8HJZ60.0A0A1U8HJZ6_GOSHI; transcription factor-like protein DPB isoform X1
STRINGGorai.002G247000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61392641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-141Transcription factor DP