PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_00448_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family S1Fa-like
Protein Properties Length: 108aa    MW: 12093.1 Da    PI: 9.6306
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_00448_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA137.92.3e-4343108570
                        S1FA   5 kveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 
                                 ++eakG+nPGlivllv+ggll++flvgnyily yaqk+lPPrkkkPvskkk+kre+lkqGv++PGe
  Cotton_A_00448_BGI-A2_v1.0  43 ETEAKGFNPGLIVLLVIGGLLITFLVGNYILYSYAQKTLPPRKKKPVSKKKMKRERLKQGVSAPGE 108
                                 689**************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046891.1E-4044108IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MEAEFLCGQP ENSSNGCQNM MSLNSFYRLL DYETSPGDKI IYETEAKGFN PGLIVLLVIG  60
GLLITFLVGN YILYSYAQKT LPPRKKKPVS KKKMKRERLK QGVSAPGE
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017623104.12e-44PREDICTED: DNA-binding protein S1FA-like
SwissprotQ423374e-16S1FA2_ARATH; DNA-binding protein S1FA2
TrEMBLA0A0B0N2255e-43A0A0B0N225_GOSAR; DNA-binding S1FA2
STRINGGorai.002G249300.12e-31(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28232769