PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_00390_BGI-A2_v1.0
Common NameF383_26246
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 551aa    MW: 60143.9 Da    PI: 7.1835
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_00390_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82.1e-093774141954
                                 HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                    Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                 Fe   ++yp+ +++  LAk++gL+ +qV++WF N R +
  Cotton_A_00390_BGI-A2_v1.0 377 FEHflHPYPTDTDKLMLAKQTGLSRNQVSNWFINARVR 414
                                 554459******************************88 PP
2BELL100.31.4e-32247314572
                        BELL   5 lqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                                  q+kk+ L+s+l+eV+krYkqy++q+q v++sFe+vaglg+a+p+++lA+ka+S+hFr Lk+ai+eq+
  Cotton_A_00390_BGI-A2_v1.0 247 GQRKKSTLISILDEVYKRYKQYYQQMQSVVASFECVAGLGNAAPFANLAMKAMSKHFRYLKNAITEQL 314
                                 599***************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.3E-51183312IPR006563POX domain
PfamPF075263.8E-36188311IPR006563POX domain
PROSITE profilePS5007112.098355418IPR001356Homeobox domain
CDDcd000866.51E-13358419No hitNo description
SMARTSM003897.3E-10358422IPR001356Homeobox domain
SuperFamilySSF466896.84E-17360424IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-27361422IPR009057Homeodomain-like
PfamPF059201.3E-18375414IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MAEGFEPYHV PQQSRRDKLR IMAQNEPTTG VSLSGCSGLL PFYDPSFLSS DLLTCAAAAA  60
GSHEYHHPPP SGTKDGVNFT GFVGGVFNSS PSLDHLNPSS IHDVDNNNNN NQFLYTPQNL  120
SYDNNNGGGG GGEVVVYKPE PLSLSLSSHY THQNSSIYTD MVPAIFSGAN GSTSNSVPLG  180
PFTGYASILK GSRFLRPAQQ LLEELCDVGK GIYTEKASLM ELPPLQNPHT NPLDGGDSSG  240
SGGGGDGQRK KSTLISILDE VYKRYKQYYQ QMQSVVASFE CVAGLGNAAP FANLAMKAMS  300
KHFRYLKNAI TEQLQFTNKA HAQISPGKNE GPRFGNGDGS FYNRAVQNSG FLQNQPVWRP  360
QRGLPERAVT VLRAWLFEHF LHPYPTDTDK LMLAKQTGLS RNQVSNWFIN ARVRLWKPMV  420
EEIHMLETRQ KDERNANKSG DENPSTSAQR VEDKTPSKRT RNELPNVPVG NEQPNMSTSY  480
NSFSTHPHSS SVSLTLGLHQ NNSIGLSESF PINAGQCFGL GIEGNSEGYV IGGRHFGRDV  540
VGGQLLHDFV G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A3e-16364422563Homeobox protein Meis2
4xrm_B3e-16364422563Homeobox protein Meis2
4xrs_A3e-16364421158Homeobox protein Meis1
4xrs_B3e-16364421158Homeobox protein Meis1
5bng_A3e-16364422159Homeobox protein Meis2
5bng_B3e-16364422159Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5275021e-165HQ527502.1 Gossypium herbaceum clone NBRI_B_5548 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017622483.10.0PREDICTED: BEL1-like homeodomain protein 9
SwissprotQ9LZM81e-130BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBLA0A1U8PFX10.0A0A1U8PFX1_GOSHI; BEL1-like homeodomain protein 9
STRINGGorai.002G255800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56882746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.11e-110TALE family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]
  4. Andrés F, et al.
    Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.
    Plant Physiol., 2015. 169(3): p. 2187-99
    [PMID:26417007]
  5. Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R
    Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis.
    Dev. Cell, 2016. 39(2): p. 198-208
    [PMID:27666746]
  6. Sehra B,Franks RG
    Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
    Front Plant Sci, 2017. 8: p. 1712
    [PMID:29085379]
  7. Simonini S,Stephenson P,Østergaard L
    A molecular framework controlling style morphology in Brassicaceae.
    Development, 2018.
    [PMID:29440299]