PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_00256_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 279aa MW: 32328.2 Da PI: 9.532

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_00256_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	149.9	1.3e-46	12	138	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 pGfrFhPt+eel+ +yL++ v gk l+ +vi ++iy+++PwdLp k +e+ewyfF++ d+k+ +g r+nr+tk+g+Wka Cotton_A_00256_BGI-A2_v1.0 12 PGFRFHPTEEELLEFYLRNIVYGKMLSS-DVIGFLNIYHHDPWDLPGLSKIGEREWYFFVPIDRKHGKGGRPNRTTKNGFWKA 93 9**********************999.99***********8778899************************** PP NAM 86 tgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 tg+d++++s +++ +g kktLvfykgra++g ktdWvm+eyrl Cotton_A_00256_BGI-A2_v1.0 94 TGSDRKIVSLsdQKKMIGFKKTLVFYKGRAQRGCKTDWVMNEYRL 138 ***998667788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	52.815	10	155	IPR003441	NAC domain
SuperFamily	SSF101941	3.92E-54	11	155	IPR003441	NAC domain
Pfam	PF02365	9.3E-25	12	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MSYQSNPEIE LPGFRFHPTE EELLEFYLRN IVYGKMLSSD VIGFLNIYHH DPWDLPGLSK 60 IGEREWYFFV PIDRKHGKGG RPNRTTKNGF WKATGSDRKI VSLSDQKKMI GFKKTLVFYK 120 GRAQRGCKTD WVMNEYRLPD ATLPKDIVMC KIYRKATSLK VLEQRAAMEE ELKNTSLPSS 180 SSFSSMDTIS FCTPKQDLVV FKKEEEEEAM VKEKRSDGIA KKQKKISSAS LQLPLGNENM 240 GQLQIPKMLT DWTQDQFWAQ LNSPWFQNLT PYVANILNF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	6e-45	1	155	3	168	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC847234	0.0	KC847234.1 Gossypium hirsutum NAC domain protein NAC57 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017641972.1	0.0	PREDICTED: NAC domain-containing protein 35-like
Swissprot	Q10S65	3e-90	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A1U8MEM7	0.0	A0A1U8MEM7_GOSHI; protein FEZ-like
STRING	Gorai.002G001900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3899	28	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	5e-98	NAC domain containing protein 36

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]