PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_00245_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 264aa    MW: 28719 Da    PI: 6.3047
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_00245_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_123.99.3e-0888136351
                                 XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                      bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 
                                 e k  +r   NReA r++Rq+ ka+ + Le++v  L + N++L k+l+ 
  Cotton_A_00245_BGI-A2_v1.0  88 EKKPKKRSLGNREAVRKYRQKVKARAASLEDEVVRLRTLNQQLLKRLQG 136
                                 668889999***********************************99974 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.4E-1185154No hitNo description
SMARTSM003383.8E-686153IPR004827Basic-leucine zipper domain
CDDcd146862.60E-987145No hitNo description
PfamPF077164.6E-1288143IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.61E-690136No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MDEGELDFSN QEVFSGGNNM GDIPSSCSMD SFFNEILNDS HACTHTHTCN PPGPDNSHTH  60
TCFHVHTKIV PASTEDEAAA DDTEGSREKK PKKRSLGNRE AVRKYRQKVK ARAASLEDEV  120
VRLRTLNQQL LKRLQGQAAL EAEIARLKCL LVDVRGRIEG EIGSFPYQKP TANNVNTLNL  180
PGAYLMNPCN IQCNDQMYCL QPEVEGNTGE ATALDGHGFN GCEFDDIQCL ASQNSGAKEL  240
PRGGVGIAAA NGNSSGTKRR KGKI
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3550300.0DQ355030.1 Gossypium hirsutum putative retinoblastoma binding protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017639070.10.0PREDICTED: basic leucine zipper 23 isoform X1
SwissprotQ8GTS21e-111BZP23_ARATH; Basic leucine zipper 23
TrEMBLA0A2P5X2H60.0A0A2P5X2H6_GOSBA; Uncharacterized protein
STRINGGorai.002G003000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20362879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16770.11e-110bZIP family protein
Publications ? help Back to Top
  1. Azevedo H, et al.
    Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply.
    Genom Data, 2016. 7: p. 256-8
    [PMID:26981422]
  2. Castro PH, et al.
    Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants.
    Sci Rep, 2017. 7(1): p. 3806
    [PMID:28630437]
  3. Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE
    F-group bZIPs in barley-a role in Zn deficiency.
    Plant Cell Environ., 2017. 40(11): p. 2754-2770
    [PMID:28763829]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]