PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cotton_A_00229_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | DBB | ||||||||
Protein Properties | Length: 200aa MW: 22139.9 Da PI: 4.9364 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.7 | 3.5e-06 | 5 | 35 | 6 | 36 |
zf-B_box 6 CpeHeekelqlfCedCqqllCedClleeHkg 36 C+ ++++e++ fC ++ lC C + H+ Cotton_A_00229_BGI-A2_v1.0 5 CEVCDKEEATVFCPADEAALCGVCDHNVHHA 35 ***************************9743 PP | |||||||
2 | zf-B_box | 31.9 | 2.6e-10 | 52 | 91 | 2 | 39 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Htv 39 e + C+ ++ek++ lfC++++ lC++C +Hk Ht+ Cotton_A_00229_BGI-A2_v1.0 52 ESPLCDICQEKRALLFCQEDRAILCRECDIPIHKAneHTT 91 6789*****************************8889987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.694 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 5.7E-8 | 4 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.45E-5 | 5 | 47 | No hit | No description |
PROSITE profile | PS50119 | 10.196 | 51 | 98 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.2E-15 | 51 | 98 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.5E-8 | 52 | 92 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.83E-9 | 54 | 98 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:1900458 | Biological Process | negative regulation of brassinosteroid mediated signaling pathway | ||||
GO:2000306 | Biological Process | positive regulation of photomorphogenesis | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 200 aa Download sequence Send to blast |
MKIWCEVCDK EEATVFCPAD EAALCGVCDH NVHHANKLAT KHCRFALLQP DESPLCDICQ 60 EKRALLFCQE DRAILCRECD IPIHKANEHT TKHNRFLLTG VKLSSSSSCS SATGFPPALN 120 TVSSSSNGGY GGQTICSEAE TTSQSNKEIE KPLTTYRIEH NYTIGDDDVL VSMSISEYLM 180 ETLPGWRVDD FLEPSSYAAR |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as positive regulator of seedling photomorphogenesis. Plays a negative role in brassinosteroid responses. {ECO:0000269|PubMed:22535582}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JX615304 | 1e-169 | JX615304.1 Gossypium hirsutum clone NBRI_GE59224 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017641013.1 | 1e-149 | PREDICTED: B-box zinc finger protein 20-like | ||||
Swissprot | Q0IGM7 | 8e-67 | BBX20_ARATH; B-box zinc finger protein 20 | ||||
TrEMBL | A0A1U8MEI2 | 1e-147 | A0A1U8MEI2_GOSHI; B-box zinc finger protein 20-like | ||||
STRING | Gorai.002G004700.1 | 1e-126 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6597 | 27 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G39070.1 | 3e-67 | DBB family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|