PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_00080_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 422aa MW: 47033.9 Da PI: 4.8473 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.3 | 4.6e-19 | 213 | 263 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+tae+Aa a+++ + kl+ge Cotton_A_00080_BGI-A2_v1.0 213 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAALAYDREAFKLRGE 263 59******9.**********955...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.33E-34 | 212 | 272 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.3E-32 | 213 | 271 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-23 | 213 | 271 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.932 | 213 | 270 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.7E-40 | 213 | 276 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.2E-12 | 214 | 263 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.4E-11 | 214 | 225 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.4E-11 | 236 | 252 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 422 aa Download sequence Send to blast |
MAAAENSGEF NKGVGDVQDW EVEKGNELDF GFEKRQWKPV FGEASMSQRP NKKITQRQEP 60 VRSIASMADQ SSSLPSSSPS LTLSLPSSSS SSSNASLPSS RMVFPFAFDG TQNPVYFPHP 120 MFQPLPQSQQ QMISFSPQQQ QQQQHGFVYR PFFAGESSPV PPTQLPQPSQ QQLLQYWSDT 180 LSPRRRMMMM SRLGQDGRQL YRPPLQPINT TKLYRGVRQR HWGKWVAEIR LPRNRTRLWL 240 GTFDTAEDAA LAYDREAFKL RGENARLNFP ELFLNKDKDT SPGPSSTVPP QDESKEPNSQ 300 STEMEAMPPP SQGDNNPDSD SGLGSSEATA SDEVQMAAEG SGSGSGSQEL VWGDMSEAWF 360 NVIQEGWGPG SPVWDDLDTS NNLLLPSNLP FPNQNHHQFG DTSPSSSSSC PMKSFFWKDH 420 DS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 7e-21 | 212 | 270 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX614653 | 0.0 | JX614653.1 Gossypium hirsutum clone NBRI_GE58209 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017640747.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF053-like | ||||
TrEMBL | A0A0D2M5N3 | 0.0 | A0A0D2M5N3_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.002G018000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2141 | 27 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20880.1 | 1e-47 | ERF family protein |