PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_00080_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 422aa    MW: 47033.9 Da    PI: 4.8473
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_00080_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.6e-19213263256
                         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                  y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  Cotton_A_00080_BGI-A2_v1.0 213 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAALAYDREAFKLRGE 263
                                 59******9.**********955...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.33E-34212272No hitNo description
Gene3DG3DSA:3.30.730.104.3E-32213271IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-23213271IPR016177DNA-binding domain
PROSITE profilePS5103222.932213270IPR001471AP2/ERF domain
SMARTSM003802.7E-40213276IPR001471AP2/ERF domain
PfamPF008472.2E-12214263IPR001471AP2/ERF domain
PRINTSPR003678.4E-11214225IPR001471AP2/ERF domain
PRINTSPR003678.4E-11236252IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MAAAENSGEF NKGVGDVQDW EVEKGNELDF GFEKRQWKPV FGEASMSQRP NKKITQRQEP  60
VRSIASMADQ SSSLPSSSPS LTLSLPSSSS SSSNASLPSS RMVFPFAFDG TQNPVYFPHP  120
MFQPLPQSQQ QMISFSPQQQ QQQQHGFVYR PFFAGESSPV PPTQLPQPSQ QQLLQYWSDT  180
LSPRRRMMMM SRLGQDGRQL YRPPLQPINT TKLYRGVRQR HWGKWVAEIR LPRNRTRLWL  240
GTFDTAEDAA LAYDREAFKL RGENARLNFP ELFLNKDKDT SPGPSSTVPP QDESKEPNSQ  300
STEMEAMPPP SQGDNNPDSD SGLGSSEATA SDEVQMAAEG SGSGSGSQEL VWGDMSEAWF  360
NVIQEGWGPG SPVWDDLDTS NNLLLPSNLP FPNQNHHQFG DTSPSSSSSC PMKSFFWKDH  420
DS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-21212270160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6146530.0JX614653.1 Gossypium hirsutum clone NBRI_GE58209 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017640747.10.0PREDICTED: ethylene-responsive transcription factor ERF053-like
TrEMBLA0A0D2M5N30.0A0A0D2M5N3_GOSRA; Uncharacterized protein
STRINGGorai.002G018000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21412775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.11e-47ERF family protein