PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna35144.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 400aa MW: 46526.7 Da PI: 6.9873

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna35144.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	23.4	2e-07	65	107	49	90
FAR1 49 ekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 e++r + etrt C akl++ ++ +++++v+ + +HnH la mrna35144.1-v1.0-hybrid 65 ESSRYAQRETRTLCGAKLRIGYSEaTKVYVVKAFIPQHNHMLA 107 56788999************999*************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10551	4.9E-31	229	323	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MDPSENEEQP SSGFEDVKIH VPRHGSFSVF DIEAMIFNTV DEAESFYAAY FVAVGFSIRK 60 GDKGESSRYA QRETRTLCGA KLRIGYSEAT KVYVVKAFIP QHNHMLATSN QIPFIRTNRH 120 VGGESLALTN TMTRVSIRPC HAYEYMVEQS EEYRRVGFTV KDLYNKIDQQ RRTTPFESDS 180 ECALLYMNAL AVKDLHFFCR FTTDSEDRMV DMFWRNGHSF VDYQCYGDVL TFNSTYKTNV 240 YNRPLFLFVG TNNHRGSIVF GAALLSDETV ETYTWLLSKF LDSMNGKMPK AIIIDGDEVM 300 RNVIRTVMPE ARHRLCIWHI GQNANSHLKS VEKLKAFNRC IRKYQTVEQF DRLWQDMLDE 360 FDLHNNDWIN NVYEKRDKFS QAFFRDIFMA GMRSTQIKE*

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MDPSENEEQP SSGFEDVKIH VPRHGSFSVF DIEAMIFNTV DEAESFYAAY FVAVGFSIRK  60
GDKGESSRYA QRETRTLCGA KLRIGYSEAT KVYVVKAFIP QHNHMLATSN QIPFIRTNRH  120
VGGESLALTN TMTRVSIRPC HAYEYMVEQS EEYRRVGFTV KDLYNKIDQQ RRTTPFESDS  180
ECALLYMNAL AVKDLHFFCR FTTDSEDRMV DMFWRNGHSF VDYQCYGDVL TFNSTYKTNV  240
YNRPLFLFVG TNNHRGSIVF GAALLSDETV ETYTWLLSKF LDSMNGKMPK AIIIDGDEVM  300
RNVIRTVMPE ARHRLCIWHI GQNANSHLKS VEKLKAFNRC IRKYQTVEQF DRLWQDMLDE  360
FDLHNNDWIN NVYEKRDKFS QAFFRDIFMA GMRSTQIKE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna35144.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004305391.1	0.0	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like
STRING	XP_004305391.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13896	2	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-54	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	mrna35144.1-v1.0-hybrid