PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna35121.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | FAR1 | ||||||||
Protein Properties | Length: 248aa MW: 28125.8 Da PI: 8.275 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 51.6 | 3.1e-16 | 45 | 134 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtklele 84 +fY++Y+ vGF rk+ + + ng i +r++vC keg+r ++ + + +r++r++tr++ +a ++++ ++ + +++v+ ++ e mrna35121.1-v1.0-hybrid 45 RFYCAYSAAVGFGCRKDDKGEA--NGLIRWRQWVCCKEGTRGKKYLEaDGLSRTPRKQTRVNFQAIFQINYNDgSRVYMVKIFVPE 128 5***************987776..9****************9998774677899*******************99*********** PP FAR1 85 HnHela 90 HnHela mrna35121.1-v1.0-hybrid 129 HNHELA 134 ****97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.7E-14 | 45 | 134 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MDASETEKQP NKGVEDVAVD VLGFGCLMIA DVRALTFETV DEAERFYCAY SAAVGFGCRK 60 DDKGEANGLI RWRQWVCCKE GTRGKKYLEA DGLSRTPRKQ TRVNFQAIFQ INYNDGSRVY 120 MVKIFVPEHN HELATGNQIA FVRSHRHVSD AALALTNTMT RVSIRPCHTY EYMVEQAGGY 180 SVVGFTMKDL YNKLDQQRRT SPFESDSEGE LSYMSTGSKR PTLHMQIHYR FGRQVSGHFL 240 GRWAFIC* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna35121.1-v1.0-hybrid |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004308570.1 | 1e-171 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
STRING | XP_004308570.1 | 1e-171 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15759 | 4 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 4e-21 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | mrna35121.1-v1.0-hybrid |