PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna35102.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | FAR1 | ||||||||
Protein Properties | Length: 490aa MW: 56754.7 Da PI: 8.6113 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 21.5 | 7.8e-07 | 45 | 89 | 1 | 47 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk 47 +fY++Y vGF rk+ + +s ng i +r++vC keg+r+++ + mrna35102.1-v1.0-hybrid 45 RFYCAYLAAVGFGCRKDDKGES--NGLIWWRQWVCCKEGTRDKKYLE 89 5****************99998..9****************998776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50966 | 9.94 | 282 | 321 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 2.7E-5 | 296 | 323 | IPR006564 | Zinc finger, PMZ-type |
Pfam | PF04434 | 3.1E-6 | 298 | 317 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 490 aa Download sequence Send to blast |
MDAPENEKQP NKGVEDMAVD VPGFGSLTIA DVRALTFETV DEAERFYCAY LAAVGFGCRK 60 DDKGESNGLI WWRQWVCCKE GTRDKKYLEA DGKNAFTHLK SEEELKAFNR CVRKYQTVEQ 120 FERLWQEMIE ELDLHDDIWI GNMYEKRDKF CQAFFGDIFM AGMRSTQGCE GMNKEFKRVL 180 GKGKSLVELV TLVSRLLMKL RHNQEKDEFI NMNFPGVVTH LVDLEIQASS IFTHDVFKWI 240 VREIKKERFI TLKQGAKCHE DGSHVYKVSV YKRPEFDNTV VYHPEKETDS AEDPIMVCSC 300 RMFQYRGVPC RHMFTVMINE HIFELHKSLI IKRWSKDART MCEIPYPDQS MPREALEVSR 360 YGALTAECNR LCFYASKTDA GYNLLQKEIS KLSSIVEGFA KEKEKVQAPA TPSNIKGNVV 420 RDPIPVRTKG REKMTRRLRL PDDRLLVVIA KVLDTTVKHV MLGRRKKKLR RAMKMTNETL 480 TLVLQLQHL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 463 | 468 | RRKKKL |
2 | 463 | 469 | RRKKKLR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna35102.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004301632.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
STRING | XP_004301632.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13896 | 2 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27110.2 | 2e-23 | FAR1-related sequence 3 |
Link Out ? help Back to Top | |
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Phytozome | mrna35102.1-v1.0-hybrid |