PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna35102.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 490aa    MW: 56754.7 Da    PI: 8.6113
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna35102.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR121.57.8e-074589147
                     FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk 47
                             +fY++Y   vGF  rk+ + +s  ng i +r++vC keg+r+++  +
  mrna35102.1-v1.0-hybrid 45 RFYCAYLAAVGFGCRKDDKGES--NGLIWWRQWVCCKEGTRDKKYLE 89
                             5****************99998..9****************998776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509669.94282321IPR007527Zinc finger, SWIM-type
SMARTSM005752.7E-5296323IPR006564Zinc finger, PMZ-type
PfamPF044343.1E-6298317IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MDAPENEKQP NKGVEDMAVD VPGFGSLTIA DVRALTFETV DEAERFYCAY LAAVGFGCRK  60
DDKGESNGLI WWRQWVCCKE GTRDKKYLEA DGKNAFTHLK SEEELKAFNR CVRKYQTVEQ  120
FERLWQEMIE ELDLHDDIWI GNMYEKRDKF CQAFFGDIFM AGMRSTQGCE GMNKEFKRVL  180
GKGKSLVELV TLVSRLLMKL RHNQEKDEFI NMNFPGVVTH LVDLEIQASS IFTHDVFKWI  240
VREIKKERFI TLKQGAKCHE DGSHVYKVSV YKRPEFDNTV VYHPEKETDS AEDPIMVCSC  300
RMFQYRGVPC RHMFTVMINE HIFELHKSLI IKRWSKDART MCEIPYPDQS MPREALEVSR  360
YGALTAECNR LCFYASKTDA GYNLLQKEIS KLSSIVEGFA KEKEKVQAPA TPSNIKGNVV  420
RDPIPVRTKG REKMTRRLRL PDDRLLVVIA KVLDTTVKHV MLGRRKKKLR RAMKMTNETL  480
TLVLQLQHL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1463468RRKKKL
2463469RRKKKLR
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna35102.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004301632.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
STRINGXP_004301632.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1389628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.22e-23FAR1-related sequence 3