PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna35014.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 498aa    MW: 55818.3 Da    PI: 4.4347
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna35014.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM113.91.7e-3581511128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk...............kvkaeekewyfFskrdkkyat 70 
                              lp+GfrFhP+deel+++yL+ k ++++  e++ +i+e+d+ k+eP+dLp+               ++++ + ewyfFs+r  k+++
  mrna35014.1-v1.0-hybrid   8 LPKGFRFHPSDEELLSHYLQMKNDQREdPEITAIIPEIDVSKHEPRDLPAlvfaraefldrewftMADSPDMEWYFFSPRVFKHSN 93 
                              799********************99994555566***************66899999999998755555677********888775 PP

                      NAM  71 ..gkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                +++ nr+t++g Wk++g+d++++ + +++++g k++L+fy    p+ +ktdWv+hey l
  mrna35014.1-v1.0-hybrid  94 skSTKINRTTDEGSWKKQGNDRRITGAfSDKQIGGKRILTFY---LPNKQKTDWVIHEYYL 151
                              2267899******************9999999**********...678899********87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.11E-353169IPR003441NAC domain
PROSITE profilePS5100542.128171IPR003441NAC domain
PfamPF023651.9E-219150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MSYGGFSLPK GFRFHPSDEE LLSHYLQMKN DQREDPEITA IIPEIDVSKH EPRDLPALVF  60
ARAEFLDREW FTMADSPDME WYFFSPRVFK HSNSKSTKIN RTTDEGSWKK QGNDRRITGA  120
FSDKQIGGKR ILTFYLPNKQ KTDWVIHEYY LTKADSDEQI GDFVLCRLKD NRLKKKSGKS  180
EHDPQDAPLC DGREPSSGSC SMAFNVEDQA SSELGNVVVI PNGNVDEAEH GGGSCSMTLY  240
VESPASKQLE NVLLNPYGNN DDTEHGHIVS GMLTEAEEYQ GFKELQDALF ESDGNDQGLR  300
GSETAPCYID KNDLSVSVEG QPDSYNSPDS EMVEELLHEP GDLALLHPPP SIQLQSPIYT  360
KLGTHNIFND EYRKRKYPFG DSEPFLTKKN HTDEVDSYTS SNSENQPADA IPEGYSQPGG  420
NLGSDLFRSQ TLPSINREPR VLSHDNIWDH LPSIIEGFEF SLANFSDTVI DRGISDRNIE  480
GAYGSANDYN ALAIGETL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-23617213169Stress-induced transcription factor NAC1
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna35014.1-v1.0-hybrid
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011468876.10.0PREDICTED: NAC domain-containing protein 4-like isoform X1
TrEMBLA0A2P6SJ020.0A0A2P6SJ02_ROSCH; Putative transcription factor NAM family
STRINGXP_004308753.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16106410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.14e-30NAC domain containing protein 28