PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna35014.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NAC | ||||||||
Protein Properties | Length: 498aa MW: 55818.3 Da PI: 4.4347 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 113.9 | 1.7e-35 | 8 | 151 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk...............kvkaeekewyfFskrdkkyat 70 lp+GfrFhP+deel+++yL+ k ++++ e++ +i+e+d+ k+eP+dLp+ ++++ + ewyfFs+r k+++ mrna35014.1-v1.0-hybrid 8 LPKGFRFHPSDEELLSHYLQMKNDQREdPEITAIIPEIDVSKHEPRDLPAlvfaraefldrewftMADSPDMEWYFFSPRVFKHSN 93 799********************99994555566***************66899999999998755555677********888775 PP NAM 71 ..gkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ nr+t++g Wk++g+d++++ + +++++g k++L+fy p+ +ktdWv+hey l mrna35014.1-v1.0-hybrid 94 skSTKINRTTDEGSWKKQGNDRRITGAfSDKQIGGKRILTFY---LPNKQKTDWVIHEYYL 151 2267899******************9999999**********...678899********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.11E-35 | 3 | 169 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 42.12 | 8 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-21 | 9 | 150 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 498 aa Download sequence Send to blast |
MSYGGFSLPK GFRFHPSDEE LLSHYLQMKN DQREDPEITA IIPEIDVSKH EPRDLPALVF 60 ARAEFLDREW FTMADSPDME WYFFSPRVFK HSNSKSTKIN RTTDEGSWKK QGNDRRITGA 120 FSDKQIGGKR ILTFYLPNKQ KTDWVIHEYY LTKADSDEQI GDFVLCRLKD NRLKKKSGKS 180 EHDPQDAPLC DGREPSSGSC SMAFNVEDQA SSELGNVVVI PNGNVDEAEH GGGSCSMTLY 240 VESPASKQLE NVLLNPYGNN DDTEHGHIVS GMLTEAEEYQ GFKELQDALF ESDGNDQGLR 300 GSETAPCYID KNDLSVSVEG QPDSYNSPDS EMVEELLHEP GDLALLHPPP SIQLQSPIYT 360 KLGTHNIFND EYRKRKYPFG DSEPFLTKKN HTDEVDSYTS SNSENQPADA IPEGYSQPGG 420 NLGSDLFRSQ TLPSINREPR VLSHDNIWDH LPSIIEGFEF SLANFSDTVI DRGISDRNIE 480 GAYGSANDYN ALAIGETL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-23 | 6 | 172 | 13 | 169 | Stress-induced transcription factor NAC1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna35014.1-v1.0-hybrid |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011468876.1 | 0.0 | PREDICTED: NAC domain-containing protein 4-like isoform X1 | ||||
TrEMBL | A0A2P6SJ02 | 0.0 | A0A2P6SJ02_ROSCH; Putative transcription factor NAM family | ||||
STRING | XP_004308753.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16106 | 4 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65910.1 | 4e-30 | NAC domain containing protein 28 |
Link Out ? help Back to Top | |
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Phytozome | mrna35014.1-v1.0-hybrid |