PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna35013.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 278aa    MW: 31161.1 Da    PI: 6.5982
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna35013.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM107.41.8e-3381601128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.........................kvkaeekewyfF 61 
                              lp GfrF+P+deel+++yL+kk ++++ e++ +i+e+d+ k+eP+dLp                          ++++ + ewyfF
  mrna35013.1-v1.0-hybrid   8 LPNGFRFQPSDEELLNHYLQKKNQREDPEITAIIPEIDVSKHEPRDLPVlvcdfcstgvhrggvsgqglrewftMADSPDMEWYFF 93 
                              699***************************999***************6689***********999999998755555677***** PP

                      NAM  62 skrdkkyat..gkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              s+r  k+++  +++ nr+  +g+Wk++g+d++++ + +++++g k++L+f+    pk +k dWv+hey l
  mrna35013.1-v1.0-hybrid  94 SPRVFKHSNskSTKMNRTRGEGFWKKQGSDRRITGAySDKQIGGKRILTFF---LPKKQKIDWVIHEYYL 160
                              ***88877522678999999**************9988999**********...677789********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-323178IPR003441NAC domain
PROSITE profilePS5100539.2578180IPR003441NAC domain
PfamPF023654.3E-219159IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MSYGGFSLPN GFRFQPSDEE LLNHYLQKKN QREDPEITAI IPEIDVSKHE PRDLPVLVCD  60
FCSTGVHRGG VSGQGLREWF TMADSPDMEW YFFSPRVFKH SNSKSTKMNR TRGEGFWKKQ  120
GSDRRITGAY SDKQIGGKRI LTFFLPKKQK IDWVIHEYYL TKADSDEQIG DFVLCRLKDN  180
HLKKKSGKSE HDRQDAPLCD GREPSSGSCI MAFNVEGQAS SELGNVVVIP NGNVDEAEHG  240
GGSCIMTLNV ESPASKQLEN VSRMVLELIL EGGEKCH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-23617715162NO APICAL MERISTEM PROTEIN
1ut4_B6e-23617715162NO APICAL MERISTEM PROTEIN
1ut7_A6e-23617715162NO APICAL MERISTEM PROTEIN
1ut7_B6e-23617715162NO APICAL MERISTEM PROTEIN
4dul_A6e-23617715162NAC domain-containing protein 19
4dul_B6e-23617715162NAC domain-containing protein 19
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna35013.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011468876.11e-156PREDICTED: NAC domain-containing protein 4-like isoform X1
TrEMBLA0A2P6SIX81e-109A0A2P6SIX8_ROSCH; Putative transcription factor NAM family
STRINGXP_004308270.11e-144(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16106410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.18e-29NAC domain containing protein 28