PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna34935.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | FAR1 | ||||||||
Protein Properties | Length: 692aa MW: 80220.4 Da PI: 9.1313 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 34.8 | 5.3e-11 | 55 | 182 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk....................................te 49 k+Y+eY+++ GF +r++ s k+ ++ +e+t+ +fvC + k ++kk ++ mrna34935.1-v1.0-hybrid 55 KYYEEYGRQEGFWIRTQCSVKTrSHFDEVTSCRFVCAHQRKYIQKKKLnegwkkdhqkeicdnenenenkngdvnveksgdvntKK 140 69**************998888467799************9988887789******************************998666 PP FAR1 50 kerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 + ++ ++ ++gCka+++v ek ++kw+v+ ++ HnH+++ mrna34935.1-v1.0-hybrid 141 VADKNCSTGKCGCKATMRVIHEKwSNKWRVSVFRDFHNHKVV 182 666788888**********99999***************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.6E-8 | 55 | 182 | IPR004330 | FAR1 DNA binding domain |
PROSITE profile | PS50966 | 9.977 | 385 | 421 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 0.0012 | 396 | 423 | IPR006564 | Zinc finger, PMZ-type |
Pfam | PF04434 | 5.3E-6 | 397 | 420 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 692 aa Download sequence Send to blast |
MTDFNEDSSP SQCMPPVANT SEVENGEMNT PIRRVKHLEA PYLGMLFESI EEARKYYEEY 60 GRQEGFWIRT QCSVKTRSHF DEVTSCRFVC AHQRKYIQKK KLNEGWKKDH QKEICDNENE 120 NENKNGDVNV EKSGDVNTKK VADKNCSTGK CGCKATMRVI HEKWSNKWRV SVFRDFHNHK 180 VVTPARRMKM KSNKHMPKAA RSMTEIFHKE NLPIAKVHSI LGGAEIGFNK RDCYNHLKSV 240 RHRQLDGGDA QSKSKFKKEM KRCIQFTYKT EDFEEKWKAL MKENGLEEND WLKSLYEIRA 300 SWVPVYNRGT FFAGMNTIGQ HKFRIVNDDE FLLKDAAKLY TRNVFNKFKG EWTRINHYKV 360 EERDRDNEWP SYLVKKRLGE HEQDFIVRLD LTTYNGSCEC QNFEFVGILC RHLLKVFSRL 420 DIETIPAHFI LPRWRQEANK FRIMDLEDLA RSVGNEESEA LRLDHMCHQA TKLACIAAHS 480 KEGYTLFMEA LNDISKKLSK IPDQPVISKE MSAPINQEDH PVMETCVSPN RDDPCTNTLS 540 SQSLLLDPNI SKTKVRTQQE NLLSEFRKKD SMTYVQLLYP SLNNRFQPTP NSIPSSTPLR 600 IQFLRIQPTP LRFFNPSTPL PHSSLHQDLS LRFFNPSPLL QSIAASSIHH RCFSTSPPLL 660 QYIAAAASVL QRRCFSTSPP LFHSIATTTS R* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna34935.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | M5WYV8 | 1e-156 | M5WYV8_PRUPE; Uncharacterized protein (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF26425 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27110.2 | 8e-31 | FAR1-related sequence 3 |
Link Out ? help Back to Top | |
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Phytozome | mrna34935.1-v1.0-hybrid |