PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna34935.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 692aa    MW: 80220.4 Da    PI: 9.1313
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna34935.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR134.85.3e-1155182190
                     FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk....................................te 49 
                              k+Y+eY+++ GF +r++ s k+ ++ +e+t+ +fvC  + k  ++kk                                     ++
  mrna34935.1-v1.0-hybrid  55 KYYEEYGRQEGFWIRTQCSVKTrSHFDEVTSCRFVCAHQRKYIQKKKLnegwkkdhqkeicdnenenenkngdvnveksgdvntKK 140
                              69**************998888467799************9988887789******************************998666 PP

                     FAR1  50 kerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                               + ++ ++ ++gCka+++v  ek ++kw+v+ ++  HnH+++
  mrna34935.1-v1.0-hybrid 141 VADKNCSTGKCGCKATMRVIHEKwSNKWRVSVFRDFHNHKVV 182
                              666788888**********99999***************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-855182IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.977385421IPR007527Zinc finger, SWIM-type
SMARTSM005750.0012396423IPR006564Zinc finger, PMZ-type
PfamPF044345.3E-6397420IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MTDFNEDSSP SQCMPPVANT SEVENGEMNT PIRRVKHLEA PYLGMLFESI EEARKYYEEY  60
GRQEGFWIRT QCSVKTRSHF DEVTSCRFVC AHQRKYIQKK KLNEGWKKDH QKEICDNENE  120
NENKNGDVNV EKSGDVNTKK VADKNCSTGK CGCKATMRVI HEKWSNKWRV SVFRDFHNHK  180
VVTPARRMKM KSNKHMPKAA RSMTEIFHKE NLPIAKVHSI LGGAEIGFNK RDCYNHLKSV  240
RHRQLDGGDA QSKSKFKKEM KRCIQFTYKT EDFEEKWKAL MKENGLEEND WLKSLYEIRA  300
SWVPVYNRGT FFAGMNTIGQ HKFRIVNDDE FLLKDAAKLY TRNVFNKFKG EWTRINHYKV  360
EERDRDNEWP SYLVKKRLGE HEQDFIVRLD LTTYNGSCEC QNFEFVGILC RHLLKVFSRL  420
DIETIPAHFI LPRWRQEANK FRIMDLEDLA RSVGNEESEA LRLDHMCHQA TKLACIAAHS  480
KEGYTLFMEA LNDISKKLSK IPDQPVISKE MSAPINQEDH PVMETCVSPN RDDPCTNTLS  540
SQSLLLDPNI SKTKVRTQQE NLLSEFRKKD SMTYVQLLYP SLNNRFQPTP NSIPSSTPLR  600
IQFLRIQPTP LRFFNPSTPL PHSSLHQDLS LRFFNPSPLL QSIAASSIHH RCFSTSPPLL  660
QYIAAAASVL QRRCFSTSPP LFHSIATTTS R*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna34935.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLM5WYV81e-156M5WYV8_PRUPE; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2642523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.28e-31FAR1-related sequence 3