PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna34923.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | FAR1 | ||||||||
Protein Properties | Length: 193aa MW: 22170.2 Da PI: 9.3622 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 56.4 | 9.7e-18 | 29 | 118 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtklele 84 +fY++Y+ v F k+ + +s ng i +r++vC ke +r+++ + + +r++r++tr++C+a+++++ ++ + +++v+ ++le mrna34923.1-v1.0-hybrid 29 RFYSTYSAAVRFGCMKDGKGES--NGLIRWRQWVCCKERSRDKKYLEaDGLSRTPRKQTRVNCQARFRINYNDgSRVYMVKIFVLE 112 5****************99988..9****************9998775677899*******************99*********** PP FAR1 85 HnHela 90 HnHela mrna34923.1-v1.0-hybrid 113 HNHELA 118 ****97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 9.8E-15 | 29 | 118 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MAVDVPGFRS LTIADVRALT FEIVDEAERF YSTYSAAVRF GCMKDGKGES NGLIRWRQWV 60 CCKERSRDKK YLEADGLSRT PRKQTRVNCQ ARFRINYNDG SRVYMVKIFV LEHNHELATG 120 NQIAFVRAHR HVSDAALALT NTMTRVSIRP CHTYEYMVEQ AGGYSVVGFT MKDLYNKLDQ 180 QRWTSLFESD SK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna34923.1-v1.0-hybrid |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004308570.1 | 1e-114 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
STRING | XP_004297887.1 | 1e-144 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15759 | 4 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 9e-21 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | mrna34923.1-v1.0-hybrid |