PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna34728.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | FAR1 | ||||||||
Protein Properties | Length: 85aa MW: 10002.3 Da PI: 10.1087 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 36.8 | 1.3e-11 | 26 | 82 | 2 | 65 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkak 65 fY++YAke+ F+v++ s+k+ ng i+++++ Cskeg+++ ++kk r+r++tr +Cka+ mrna34728.1-v1.0-hybrid 26 FYKSYAKEARFNVKNFVSEKK--NGVIVRKEYACSKEGTSKVTRKK-----RNRNQTRENCKAR 82 **************9998887..9***************9998777.....999********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.0E-7 | 26 | 82 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 85 aa Download sequence Send to blast |
MTYEELADMI PIKNQEFQTL QDVETFYKSY AKEARFNVKN FVSEKKNGVI VRKEYACSKE 60 GTSKVTRKKR NRNQTRENCK ARQE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna34728.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011468636.1 | 6e-25 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2P6QU81 | 1e-33 | A0A2P6QU81_ROSCH; Putative transcription factor FAR family | ||||
STRING | XP_004292126.1 | 2e-39 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 7e-08 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | mrna34728.1-v1.0-hybrid |