PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna34707.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 372aa MW: 42893.6 Da PI: 8.0155

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna34707.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	29.1	3.2e-09	56	100	1	47
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk 47 +fY +Y+ vGF +rk + +s ng i +r++vC+keg+r+ ++++ mrna34707.1-v1.0-hybrid 56 SFYAAYSVAVGFGIRKGDKAES--NGLIRRREWVCNKEGTRKANNEA 100 5**************99999..9**************998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-6	56	100	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.0E-31	238	332	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MDASGNEEQP TMDTSENEEQ PSSGFEDVKV HVPRHGNFSV SDIEAMTFNT VDEAESFYAA 60 YSVAVGFGIR KGDKAESNGL IRRREWVCNK EGTRKANNEA TKVYVVKAFI PQHNHMLTTS 120 NQIPFIRTNR HVGEEFLALK NTMTRVSIRP CHAYEYMVEQ SGGYRRVGFT VKDLYNKIDQ 180 QRRTAPFESD SKGALSYMNA LAAKDSHFFY RFTADLEDRM VDMFWRDVHS FVDYYGDVLI 240 FDSTYKTNVY NMSLVLFVGT NNHRGSIVFG AALLSDETVE TYTWLLRKFL DLMNGKMQKA 300 VITDGDEAMR TAIQTMMLEA RHRLCIWHIG QNANGHLKLT KKLKAFNRCI RKYQMVEQFD 360 RLWQDIYARR I*

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MDASGNEEQP TMDTSENEEQ PSSGFEDVKV HVPRHGNFSV SDIEAMTFNT VDEAESFYAA  60
YSVAVGFGIR KGDKAESNGL IRRREWVCNK EGTRKANNEA TKVYVVKAFI PQHNHMLTTS  120
NQIPFIRTNR HVGEEFLALK NTMTRVSIRP CHAYEYMVEQ SGGYRRVGFT VKDLYNKIDQ  180
QRRTAPFESD SKGALSYMNA LAAKDSHFFY RFTADLEDRM VDMFWRDVHS FVDYYGDVLI  240
FDSTYKTNVY NMSLVLFVGT NNHRGSIVFG AALLSDETVE TYTWLLRKFL DLMNGKMQKA  300
VITDGDEAMR TAIQTMMLEA RHRLCIWHIG QNANGHLKLT KKLKAFNRCI RKYQMVEQFD  360
RLWQDIYARR I*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna34707.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011465766.1	1e-172	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like
STRING	XP_004301290.1	1e-158	(Fragaria vesca)
STRING	XP_004308570.1	1e-157	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13896	2	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-46	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	mrna34707.1-v1.0-hybrid