PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna34674.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 551aa MW: 63973.3 Da PI: 5.4995

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna34674.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.6	1.8e-17	52	166	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk.......................tekerrtraetrtgC 62 ++Y++Y+++ GF +r+++s+k ++++e+t+r fvC egk+ +++k ++k+rr+ ++ ++gC mrna34674.1-v1.0-hybrid 52 QYYEAYGRQEGFWTRIRSSSKYrSQSNEVTCRLFVCAHEGKHVMQTQKeddltekdeisendeaetcdiqiEKKRRRSCSTVKCGC 137 69********9999877665467788*********998888889****************9999999999** PP FAR1 63 kaklkvkkek.dgkwevtkleleHnHela 90 +a+++v +k +++w+v+ ++ HnH+++ mrna34674.1-v1.0-hybrid 138 EANMRVLHDKwTNRWKVSVFSDIHNHKIV 166 ****999*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.2E-14	52	166	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 551 aa Download sequence Send to blast
MDLTIEDDNL EFSLNQASID KASDHNSQEK EVRKLKSPYV GMIFETLNEA GQYYEAYGRQ 60 EGFWTRIRSS SKYRSQSNEV TCRLFVCAHE GKHVMQTQKE DDLTEKDEIS ENDEAETCDI 120 QIEKKRRRSC STVKCGCEAN MRVLHDKWTN RWKVSVFSDI HNHKIVSPAR RMMMKSNRHM 180 PDAAKDLTEA FQRENLRISK VPSMFGGAPN IGFDNRDWRS EDTNAFFDDF VTSTTNLREF 240 VVKYEQALQK IVTRESSEDF ISEHKYRIVD DDDFLLKHAA QVYTRNIFEK FKSEWTRVKR 300 LKVEERGSDS QFHRYSVMRK IDNSWKQGAN KFRVTDSEAL VQNDGKEQSE ALRFSHMCRR 360 ATQLACYAAP SDEAYTIFLD GLDELSKKIS EINKVSQEDD MEYQDNVVQG EAANKCTSKS 420 SGPLLLDPNI SKTKGRKKDE NNRRIIKSSK RIKGGMELAQ SKQRKLQSCK KKIVYTTNPS 480 CRIWLVAKLQ EENSVHYKPE LSYLAEFDFG SLPFIPPTED FIDDDEEDSD DHLYEVSEDD 540 LEDRDYVDSD *

Sequence ? help Back to Top

Protein Sequence Length: 551 aa Download sequence Send to blast

MDLTIEDDNL EFSLNQASID KASDHNSQEK EVRKLKSPYV GMIFETLNEA GQYYEAYGRQ  60
EGFWTRIRSS SKYRSQSNEV TCRLFVCAHE GKHVMQTQKE DDLTEKDEIS ENDEAETCDI  120
QIEKKRRRSC STVKCGCEAN MRVLHDKWTN RWKVSVFSDI HNHKIVSPAR RMMMKSNRHM  180
PDAAKDLTEA FQRENLRISK VPSMFGGAPN IGFDNRDWRS EDTNAFFDDF VTSTTNLREF  240
VVKYEQALQK IVTRESSEDF ISEHKYRIVD DDDFLLKHAA QVYTRNIFEK FKSEWTRVKR  300
LKVEERGSDS QFHRYSVMRK IDNSWKQGAN KFRVTDSEAL VQNDGKEQSE ALRFSHMCRR  360
ATQLACYAAP SDEAYTIFLD GLDELSKKIS EINKVSQEDD MEYQDNVVQG EAANKCTSKS  420
SGPLLLDPNI SKTKGRKKDE NNRRIIKSSK RIKGGMELAQ SKQRKLQSCK KKIVYTTNPS  480
CRIWLVAKLQ EENSVHYKPE LSYLAEFDFG SLPFIPPTED FIDDDEEDSD DHLYEVSEDD  540
LEDRDYVDSD *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna34674.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004295765.1	1e-155	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_004295765.1	1e-155	(Fragaria vesca)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	7e-13	FAR1-related sequence 11

Link Out ? help Back to Top
Phytozome	mrna34674.1-v1.0-hybrid