PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna34612.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | FAR1 | ||||||||
Protein Properties | Length: 266aa MW: 29734.4 Da PI: 7.1648 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 63.5 | 6e-20 | 56 | 146 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 +fY +Y+ vGF +rks + +s ng i +r++vC+keg+r+ +k+ e++r r etrt C akl++ ++ +++++v+ + mrna34612.1-v1.0-hybrid 56 SFYAAYSVAVGFGIRKSDKGES--NGLIRRREWVCNKEGTRKATKSLeqGESSRYARRETRTLCGAKLRIGYSEaTKVYVVKAFIP 139 5****************99998..9****************998877446677789****************999*********** PP FAR1 84 eHnHela 90 +HnH la mrna34612.1-v1.0-hybrid 140 QHNHMLA 146 ****997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.7E-17 | 56 | 146 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MDASGNEEQP TMDPSENEEQ PSSGFEDVKV HVPRHGSVSV SDIEAMTFNT VDEAESFYAA 60 YSVAVGFGIR KSDKGESNGL IRRREWVCNK EGTRKATKSL EQGESSRYAR RETRTLCGAK 120 LRIGYSEATK VYVVKAFIPQ HNHMLATSNQ ILFIRTNRHV GEESLALTNT MTRVSIRPCH 180 AYEYMVEQSG GYRRVGFTVK DLYNKIDQQR RTAPFESDSE GALSYMNALA LTSSADSRQI 240 QKIGWWTCFG EMGIHLLTIS VMGMC* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna34612.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011457288.1 | 1e-149 | PREDICTED: uncharacterized protein LOC105349381 | ||||
STRING | XP_004292074.1 | 2e-94 | (Fragaria vesca) | ||||
STRING | XP_004308570.1 | 4e-90 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15759 | 4 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 3e-17 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | mrna34612.1-v1.0-hybrid |