PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna34568.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 696aa    MW: 79926.2 Da    PI: 8.5838
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna34568.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR159.11.4e-1818107190
                     FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtklele 84 
                              +fY++Y+  vGF  rk+ + +s  ng i +r++vC keg+r ++  + +  +r++r++tr++C+a+++++ ++ + +++v+ ++ e
  mrna34568.1-v1.0-hybrid  18 RFYCAYSAVVGFGCRKDDKGES--NGLIRWRQWVCCKEGTRGKKYLEaDGLSRTPRKQTRVNCQARFRINYNDgSRVYMVKIFVPE 101
                              5****************99998..9****************9998774677899*******************99*********** PP

                     FAR1  85 HnHela 90 
                              HnHela
  mrna34568.1-v1.0-hybrid 102 HNHELA 107
                              ****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575131No hitNo description
PfamPF031013.7E-1618107IPR004330FAR1 DNA binding domain
PfamPF105511.3E-6206235IPR018289MULE transposase domain
PROSITE profilePS509669.507409448IPR007527Zinc finger, SWIM-type
SMARTSM005752.8E-4423450IPR006564Zinc finger, PMZ-type
PfamPF044348.0E-5425443IPR007527Zinc finger, SWIM-type
Gene3DG3DSA:4.10.60.101.6E-4564635IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
MIADVRALTF ETVDEAERFY CAYSAVVGFG CRKDDKGESN GLIRWRQWVC CKEGTRGKKY  60
LEADGLSRTP RKQTRVNCQA RFRINYNDGS RVYMVKIFVP EHNHELATGN QIAFVRAHRH  120
VSDAALALTN TMTRVSIRPC HTYEFMVEQA GGYSVVGFTM KDLYNKLDQQ RRTSPFESDS  180
EGALSYMRAL AAKDPHFICR FTTDLEDSDE AMRKAIETVM PEARHRLCIW HKGKNAFTHL  240
KSEEKLKAFN RCEMIDVLDL HDDIWIGNMY EKRDKFCQAF FGDIFMAGMR STQRCEGMNK  300
EFKRVLGKGK SFVELVALVY RLLMKLRHNQ ERDEFINMNS FPGAVTHLVD LEIQASSIFT  360
HDVFKLIVRE IKKESFITLK QGAECHEDGS RVYKVSVYKR PEFDHTVVYH PEKEADNAED  420
PIMVCSCRMF QYRGVPCHHM FTVMKNEHIF ELQKSLIVKR WSKDARTVCE IPYPDQSMPR  480
EALVSRYGAL TAECNRLCFY ASKTDAGYNM LQKEISRLSS IVEGFAKEKE KVQAPATPSN  540
MKGNVVRDLV PFRTKGREKN DKKTEAPRRP ITCGYCQGIG HNSQTCNVRK EKEKAEKRNE  600
NDERNTDPHP LVATPAKRSC GYCKRSGHNT QTCDVRKEKE KAEKTNENVT GTSNDPPPSY  660
RALCTNSERS LSALWGKLAA EILMQNWDIA LEELN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna34568.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004293114.10.0PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like
STRINGXP_004293114.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1389628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G19990.11e-26FAR1-related sequence 1