PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna34381.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

GRAS

Protein Properties

Length: 325aa MW: 37718.1 Da PI: 8.1238

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna34381.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	235.2	2.8e-72	40	285	123	367
GRAS 123 lQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnl 206 +QWpaL++ L+ Rp+gpp+lRiTgv+ sg +e+++etg+rLa+++++++vpfe+ + +ak++e+l+l +L+v+++E+laVn+ mrna34381.1-v1.0-hybrid 40 FQWPALIHGLSRRPGGPPKLRITGVELTVSGcqPEETVQETGHRLANYCKRFNVPFEYYA-IAKKWETLQLVDLKVQRNEVLAVNC 124 6************************98889999*********************.7******************** PP GRAS 207 vlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 + ++llde+v ++s+rd+vL+l+++l+P+++v + + +h+++ F+ rf eal ++sa fd l+++lpre++ r E+e++gr mrna34381.1-v1.0-hybrid 125 LCRFKYLLDETVMVNSPRDTVLNLIRKLNPDIFVQSVVNGSHDAPFFVPRFREALFHFSAYFDLLDTNLPREDQIRLGFEKEFIGR 210 ********************************************************************************** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367 e+ n+vaceg++r++r et+++W+ r ++aGF+++pl++++++++k +++ + + v+e+ +++++gWk+r L mrna34381.1-v1.0-hybrid 211 EVLNIVACEGTKRIARPETYKQWQIRNTRAGFRQLPLDYEVVNKIKDKVKMGYHPFFVVNEDGHWMLQGWKGRIL 285 *************************************************999**************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	42.256	1	272	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.6E-70	40	285	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009410	Biological Process	response to xenobiotic stimulus
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MPVNEDERLR ATERSRQESP EVFNIKLASV FRRYWYPARF QWPALIHGLS RRPGGPPKLR 60 ITGVELTVSG CQPEETVQET GHRLANYCKR FNVPFEYYAI AKKWETLQLV DLKVQRNEVL 120 AVNCLCRFKY LLDETVMVNS PRDTVLNLIR KLNPDIFVQS VVNGSHDAPF FVPRFREALF 180 HFSAYFDLLD TNLPREDQIR LGFEKEFIGR EVLNIVACEG TKRIARPETY KQWQIRNTRA 240 GFRQLPLDYE VVNKIKDKVK MGYHPFFVVN EDGHWMLQGW KGRILLPHRL DDDFRLDLDC 300 ISNSDDAVAT TMTSGSTVDD ISTT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-26	40	286	141	373	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna34381.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004294644.1	1e-165	PREDICTED: scarecrow-like protein 14
Refseq	XP_011461309.1	1e-168	PREDICTED: scarecrow-like protein 14
Swissprot	Q9XE58	1e-113	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A2P6QIX5	1e-155	A0A2P6QIX5_ROSCH; Putative transcription factor GRAS family
STRING	XP_004295967.1	1e-165	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-115	SCARECROW-like 14

Link Out ? help Back to Top
Phytozome	mrna34381.1-v1.0-hybrid

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]