PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | mrna34277.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 173aa MW: 19630.7 Da PI: 7.164 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 31.4 | 6.2e-10 | 54 | 110 | 1 | 60 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrt 60 k+Y +Y+ + GF+v++++s+k+ ++ +t+ ++ Cskeg+r+ ++++ +++ +++++r+ mrna34277.1-v1.0-hybrid 54 KYYMNYGGKNGFNVKIRNSRKN-SEDFVTWVHYACSKEGFRDVKRHT--NASYSQPVSRC 110 69*****************999.5556**************998877..66666666666 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.8E-7 | 54 | 108 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 173 aa Download sequence Send to blast |
MDNADCTNLG NQPTCDSKDL KGEEEQFEHS HHNEEAIEEV ILGKEFLDVN SAKKYYMNYG 60 GKNGFNVKIR NSRKNSEDFV TWVHYACSKE GFRDVKRHTN ASYSQPVSRC GWAFLKCSQL 120 SIGSPERSLS QHVKAGSWLV DEDDDWIHSR QRTGTRSMSP KRSSDPLLPT KL* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | mrna34277.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011460719.1 | 6e-82 | PREDICTED: uncharacterized protein LOC105350414 | ||||
STRING | XP_004309633.1 | 1e-69 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G07500.1 | 4e-06 | FAR1 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | mrna34277.1-v1.0-hybrid |