PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna34213.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | FAR1 | ||||||||
Protein Properties | Length: 209aa MW: 23564.3 Da PI: 8.0763 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 64.8 | 2.4e-20 | 56 | 146 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 +fY +Y+ vGF +rks + +s ng i +r++vC+keg+r+ +k+ e++r r etrt C akl++ ++ +++++v+ + mrna34213.1-v1.0-hybrid 56 SFYAAYSVAVGFGIRKSDKGES--NGLIRRREWVCNKEGTRKANKSLeqGESSRYARRETRTLCGAKLRIGYSEaTKVYVVKAFIP 139 5****************99998..9****************999877546677779****************999*********** PP FAR1 84 eHnHela 90 +HnH la mrna34213.1-v1.0-hybrid 140 QHNHMLA 146 ****997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.5E-17 | 56 | 146 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MDASRNEEQP TMDPLENEEQ PSSGFEDVKV HVPRHGSFSV SDIEAMTSNT VDEAESFYAA 60 YSVAVGFGIR KSDKGESNGL IRRREWVCNK EGTRKANKSL EQGESSRYAR RETRTLCGAK 120 LRIGYSEATK VYVVKAFIPQ HNHMLATSNQ IPFIRTNRHV GEESLALTNT MTRVSIRPCH 180 AYEYMVEQSG GYRRVGFTVK DLYNKIDQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna34213.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011457288.1 | 1e-156 | PREDICTED: uncharacterized protein LOC105349381 | ||||
STRING | XP_004292074.1 | 1e-80 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15759 | 4 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 7e-17 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | mrna34213.1-v1.0-hybrid |