PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna34139.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 430aa    MW: 49759.3 Da    PI: 8.7236
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna34139.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR151.33.9e-1647164190
                     FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk..........................tekerrtraetr 59 
                              k+Y++Y+ + GF +r+++s+ks +r++e+t+r fvC  +gk+ ++++k                           +k+r++ ++ +
  mrna34139.1-v1.0-hybrid  47 KYYEDYGLQEGFWMRIRTSSKStSRSNEVTSRLFVCAHQGKHVTRTQKedhikekderdeedeedadeacdrhiGNKKRKSCSTVK 132
                              69**************999998788999*************999988889***********************9999999****** PP

                     FAR1  60 tgCkaklkvkkek.dgkwevtkleleHnHela 90 
                               gC+a+++v  +k ++kw+v+ ++  HnH+++
  mrna34139.1-v1.0-hybrid 133 YGCEASMRVLYDKwTNKWKVSVFSDIHNHKIV 164
                              *****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.3E-1347164IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MNLTSEDYDL GSSMNQVSSN EATDQDNRKL KSPFVGMVFE TLEEAGKYYE DYGLQEGFWM  60
RIRTSSKSTS RSNEVTSRLF VCAHQGKHVT RTQKEDHIKE KDERDEEDEE DADEACDRHI  120
GNKKRKSCST VKYGCEASMR VLYDKWTNKW KVSVFSDIHN HKIVTSARRM RMKSNRPHVY  180
TRNIFEKFKR EWSRVKRLKV EEKGSDNHFH RYSVMKKTEK LKRVYGGDGF TNTRGWRQGA  240
NKFRVTDSEA LVKNDDKEQS EALRFSHMCR RATQLACHAA PSDEAYKMYM DGLDELSNKI  300
SEVNKVTKEV AIESEDHVFQ DEVDQCASKS SESLLLDPNI SKTKGRKKDD NSTRNTNSSK  360
RIKSGMELAQ SKKRKCTMYQ QTGHNKLTCI LNPDAKRNMN ASTNQRNKNM QESDEETSEE  420
KDSDSSHQE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna34139.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-