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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | mrna34104.1-v1.0-hybrid | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 108aa MW: 12195.3 Da PI: 4.0892 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 22.3 | 4.3e-07 | 64 | 105 | 1 | 43 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkree 43
k+Y++Y+k +GF+v+k++s++ ++ge + tf+Cs+ k+++
mrna34104.1-v1.0-hybrid 64 KYYKSYGKGIGFEVCKRTSSRG-DDGELKYITFTCSRFDKPNS 105
69***************99998.9999*********9877765 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 108 aa Download sequence Send to blast |
MEENVENEMD VAYEEEDINC GNEVISASSH VEESIDTIES ENVKERVKET EIGLVFDSID 60 ELEKYYKSYG KGIGFEVCKR TSSRGDDGEL KYITFTCSRF DKPNSKS* |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | mrna34104.1-v1.0-hybrid |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_024161868.1 | 9e-39 | protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
| TrEMBL | A0A251N4Z4 | 7e-19 | A0A251N4Z4_PRUPE; Uncharacterized protein | ||||
| TrEMBL | A0A2N9J8F9 | 2e-17 | A0A2N9J8F9_FAGSY; Uncharacterized protein | ||||
| TrEMBL | M5VVB7 | 6e-18 | M5VVB7_PRUPE; Uncharacterized protein | ||||
| STRING | EMJ05339 | 1e-18 | (Prunus persica) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF13793 | 7 | 17 |
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | mrna34104.1-v1.0-hybrid |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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