PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna34006.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 438aa    MW: 49133.2 Da    PI: 4.7073
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna34006.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM113.22.8e-3581521128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...............kvkaeekewyfFskrdkkya.. 69 
                              lp+GfrF+P+d+el+++yL+kk ++++ e++ +i+e+d+ k+eP+dLp+               + ++ + ewyfFs+r  k++  
  mrna34006.1-v1.0-hybrid   8 LPKGFRFQPSDDELLSHYLQKKNDREDPEITAIIPEIDVSKHEPRDLPAlvftradfldrewftMPDSPDMEWYFFSPRVFKHSns 93 
                              799***************************999***************66899999998887743344667******987776633 PP

                      NAM  70 ..tgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                ++++ nr+t++gyWk++g+d++++ + +++++g +++L+fy    ++ +ktdWv+he+ l
  mrna34006.1-v1.0-hybrid  94 ksKSTKINRTTDEGYWKKQGNDRRITGAcSDKQIGARRILTFYL---SNKQKTDWVIHEFYL 152
                              325668999*****************9988899**********4...44468********86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-353170IPR003441NAC domain
PROSITE profilePS5100542.1748172IPR003441NAC domain
PfamPF023654.0E-229151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MSYGGFSLPK GFRFQPSDDE LLSHYLQKKN DREDPEITAI IPEIDVSKHE PRDLPALVFT  60
RADFLDREWF TMPDSPDMEW YFFSPRVFKH SNSKSKSTKI NRTTDEGYWK KQGNDRRITG  120
ACSDKQIGAR RILTFYLSNK QKTDWVIHEF YLTKADSDEQ IGDFVLCRLK DNRLKKKSGK  180
PDHDRQDAPL CDEDQAFSEL GNAVVIPKGN DDEAKAEHGG SCSMASNVES PCGNDDNAEL  240
GGGSRHIVPV MLTEAEEYQG FNALQDAVFG SNSNEQEFGG SQTGPCYVDK NDHSVSIEGQ  300
PDSEMVKELL HKPVDLALPH PPPSTQLQSL IYTKSGTNNS LNDEYHKRKN PFGDSDPFLT  360
KKNHTDEVDS NTSSNSENQP ADPIPKGCSQ PGGNLESDLF RSQKPPSIIR EPRDLPHDND  420
FIEWVDLPSI TELIEGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-22616915162NO APICAL MERISTEM PROTEIN
1ut4_B1e-22616915162NO APICAL MERISTEM PROTEIN
1ut7_A1e-22616915162NO APICAL MERISTEM PROTEIN
1ut7_B1e-22616915162NO APICAL MERISTEM PROTEIN
4dul_A1e-22616915162NAC domain-containing protein 19
4dul_B1e-22616915162NAC domain-containing protein 19
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna34006.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004308753.10.0PREDICTED: NAC domain-containing protein 18-like
TrEMBLA0A2P6SJ021e-150A0A2P6SJ02_ROSCH; Putative transcription factor NAM family
STRINGXP_004308753.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16106410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.12e-28NAC domain containing protein 28