PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna34006.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NAC | ||||||||
Protein Properties | Length: 438aa MW: 49133.2 Da PI: 4.7073 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 113.2 | 2.8e-35 | 8 | 152 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...............kvkaeekewyfFskrdkkya.. 69 lp+GfrF+P+d+el+++yL+kk ++++ e++ +i+e+d+ k+eP+dLp+ + ++ + ewyfFs+r k++ mrna34006.1-v1.0-hybrid 8 LPKGFRFQPSDDELLSHYLQKKNDREDPEITAIIPEIDVSKHEPRDLPAlvftradfldrewftMPDSPDMEWYFFSPRVFKHSns 93 799***************************999***************66899999998887743344667******987776633 PP NAM 70 ..tgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++ nr+t++gyWk++g+d++++ + +++++g +++L+fy ++ +ktdWv+he+ l mrna34006.1-v1.0-hybrid 94 ksKSTKINRTTDEGYWKKQGNDRRITGAcSDKQIGARRILTFYL---SNKQKTDWVIHEFYL 152 325668999*****************9988899**********4...44468********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.84E-35 | 3 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 42.174 | 8 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.0E-22 | 9 | 151 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 438 aa Download sequence Send to blast |
MSYGGFSLPK GFRFQPSDDE LLSHYLQKKN DREDPEITAI IPEIDVSKHE PRDLPALVFT 60 RADFLDREWF TMPDSPDMEW YFFSPRVFKH SNSKSKSTKI NRTTDEGYWK KQGNDRRITG 120 ACSDKQIGAR RILTFYLSNK QKTDWVIHEF YLTKADSDEQ IGDFVLCRLK DNRLKKKSGK 180 PDHDRQDAPL CDEDQAFSEL GNAVVIPKGN DDEAKAEHGG SCSMASNVES PCGNDDNAEL 240 GGGSRHIVPV MLTEAEEYQG FNALQDAVFG SNSNEQEFGG SQTGPCYVDK NDHSVSIEGQ 300 PDSEMVKELL HKPVDLALPH PPPSTQLQSL IYTKSGTNNS LNDEYHKRKN PFGDSDPFLT 360 KKNHTDEVDS NTSSNSENQP ADPIPKGCSQ PGGNLESDLF RSQKPPSIIR EPRDLPHDND 420 FIEWVDLPSI TELIEGF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-22 | 6 | 169 | 15 | 162 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-22 | 6 | 169 | 15 | 162 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-22 | 6 | 169 | 15 | 162 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-22 | 6 | 169 | 15 | 162 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-22 | 6 | 169 | 15 | 162 | NAC domain-containing protein 19 |
4dul_B | 1e-22 | 6 | 169 | 15 | 162 | NAC domain-containing protein 19 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna34006.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004308753.1 | 0.0 | PREDICTED: NAC domain-containing protein 18-like | ||||
TrEMBL | A0A2P6SJ02 | 1e-150 | A0A2P6SJ02_ROSCH; Putative transcription factor NAM family | ||||
STRING | XP_004308753.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16106 | 4 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65910.1 | 2e-28 | NAC domain containing protein 28 |
Link Out ? help Back to Top | |
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Phytozome | mrna34006.1-v1.0-hybrid |