PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna34005.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 967aa    MW: 106707 Da    PI: 8.5012
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna34005.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM131.27.5e-415616951128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksg 81 
                              lp+Gf+FhPt+eelv++yLkkk++g +  e++++i+ +d++++eP +Lp     +++ ++ ew+fF++++ ky+++ r+nr+tk+g
  mrna34005.1-v1.0-hybrid 561 LPVGFKFHPTEEELVNYYLKKKIHGGNeSEINQIIPFIDLCEHEPAELPGllgsETEDHDMEWFFFTRNAYKYNKSCRSNRSTKKG 646
                              79*********************99885677778***************546555555677************************* PP

                      NAM  82 yWkatgkdkevlsk.kgelvglkktLvfykgr.apkgektdWvmheyrl 128
                              +Wk tgk++ ++++ +++++g k+tL+fy+gr + k +kt Wv+hey l
  mrna34005.1-v1.0-hybrid 647 FWKITGKERGIKARrSKAVIGKKRTLTFYQGRgEAKKKKTGWVIHEYYL 695
                              ************98566679*********885145668*********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-43550719IPR003441NAC domain
PROSITE profilePS5100548.26561719IPR003441NAC domain
PfamPF023653.9E-24562694IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 967 aa     Download sequence    Send to blast
MKVARVFGVR LPVLVASMNE PSGWNLAWRT LFPEADKTRS LAALDSNQNI ATRSQPSPSR  60
VKGGGTEAGW TLLGEVHVMT SIVQIRGGRA TLASINVAIR KKRGGICTRL TRAPLKNFLK  120
ALSPLYLVRL RRGTDPVLNR SECVQLLHRR RRRGGRIDRG WSKGGLVRLR VGGQTGVGGS  180
KGCYSGSVVV AIQYRQRGIR FDKAATSHLR QKVENGWSAI AHWAWTYPFW ASGFGLWPHD  240
QWTCAWAWAL AWVWVCDPHE PQLYHSFGLD GGLHDVVLRE FFLLVMGFHM ICALRFGKHR  300
VLGQLCSDLA LLTYSQLLVA MATTMSACMG ALHSLLAAKL TNLTIPPSSS SSSPPQDFDF  360
NDIFGPPTTS SDAAPPPLLV INPQPLPLLH RPLLALHPHL LLLPMPLPIL ARDGCPGRSQ  420
KMKFVDLFGD EPELLGSGSV VRDSKTDLLL SSVNPPTAPS RPPTALVDPW TDLLLPSVDP  480
LLPPVDPWTD LLLPSVDPSN APVDPLAFVG ASQRSLEPGQ RSPKLVSDII YTPSLFSPLS  540
QSSHSNTEMT TSRDQTMPLS LPVGFKFHPT EEELVNYYLK KKIHGGNESE INQIIPFIDL  600
CEHEPAELPG LLGSETEDHD MEWFFFTRNA YKYNKSCRSN RSTKKGFWKI TGKERGIKAR  660
RSKAVIGKKR TLTFYQGRGE AKKKKTGWVI HEYYLPRNEV VSCSKQTKGD FVICRLKNKS  720
DKKESSVSNE GEPGGGDDGM NQEGNGEFLI YQSQPLDDCC SSALWSPASQ ELEAVLQTNG  780
TSGDCHEMQS PFGDSESCHR DRNEFSTCDE DETVSDVYPQ LRDPPEENLD SLLCALQPQG  840
YHPPILQSPI YTKLGNVTHP LQPQNYQPSN YRPSVILQSP IYTKLGNVPN ANLVPHPRTE  900
VNLGSTVYPF QPQDSTHRLL SKTPAKITGK GLPWDSGVSS DTNTEVAQGW VQYSSALAIG  960
TTLQCS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-235497243173Stress-induced transcription factor NAC1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1667684KKRTLTFYQGRGEAKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna34005.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46590.15e-38NAC domain containing protein 96