PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna34004.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 512aa    MW: 56715.1 Da    PI: 4.6846
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna34004.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM102.55.6e-3261481128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.............kvkaeekewyfFskrdkkya.... 69 
                              +p+G+rF P+de l+++yL+kk ++++ e++ +i+e+d++k+eP+dLp+              +++ + ewyfFs+   k++    
  mrna34004.1-v1.0-hybrid   6 VPKGLRFMPSDEVLLSHYLQKKNQREDPEITAIIPEIDMTKHEPRDLPAlvfaraenlnkewFADSPDMEWYFFSPIVLKHSnsks 91 
                              589***************************999***************668898887666543344667*****975554442222 PP

                      NAM  70 tgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              ++++ nr+tk+g Wk++g+d++++ + +++++g +++L+fy    ++ +ktdWv+he+ l
  mrna34004.1-v1.0-hybrid  92 KSTKINRTTKEGSWKKQGNDRRITGAcSDKQIGGRRILTFYL---SNKQKTDWVIHEFYL 148
                              67799*******************9988899**********4...44468********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.15E-306166IPR003441NAC domain
PROSITE profilePS5100538.2316168IPR003441NAC domain
PfamPF023659.2E-197147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MSYGPVPKGL RFMPSDEVLL SHYLQKKNQR EDPEITAIIP EIDMTKHEPR DLPALVFARA  60
ENLNKEWFAD SPDMEWYFFS PIVLKHSNSK SKSTKINRTT KEGSWKKQGN DRRITGACSD  120
KQIGGRRILT FYLSNKQKTD WVIHEFYLTK ADSDEQIGDF VLCRLKDNRL KKSGKSDQAF  180
SCKLGNVVVI PKGNDDEAKA EHGGGSRSMV SNVESPASKQ LEDVLPIPYG NDDDAEHGGG  240
SCLNVPGMLT KAEEYQGFNA LQDAVFESNG NEQEFGGSQT GPCYIDKNDR SVSIEGQPDS  300
EMVKELLHKA VDLALPHPPP STQLQSPIYT KLGTNNFLDD ECHKRKNPFG DSEPFLTKKN  360
HTDEVDSNTS SNSENQATAA IPEGCSQPGG NLGSDLFMSQ TLPSINREPR DLPHDNNFIE  420
WNDLPSIIEG FELSLANFSH TFIDQGISDD INIEGASAYE FEMEVLLAES DCRSASQAKV  480
GEDAEALYCC LSFQKKLRVL KADNSSELAA I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-19616517162NO APICAL MERISTEM PROTEIN
1ut4_B6e-19616517162NO APICAL MERISTEM PROTEIN
1ut7_A6e-19616517162NO APICAL MERISTEM PROTEIN
1ut7_B6e-19616517162NO APICAL MERISTEM PROTEIN
4dul_A6e-19616517162NAC domain-containing protein 19
4dul_B6e-19616517162NAC domain-containing protein 19
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna34004.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011469603.10.0PREDICTED: NAC domain-containing protein 68-like
TrEMBLA0A2P6SJ021e-154A0A2P6SJ02_ROSCH; Putative transcription factor NAM family
STRINGXP_004307326.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16106410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.19e-25NAC domain containing protein 28