PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna32690.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | FAR1 | ||||||||
Protein Properties | Length: 210aa MW: 23219.4 Da PI: 4.2981 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 30.2 | 1.5e-09 | 150 | 192 | 2 | 45 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeek 45 fY++Y+ +GFs rk+k k+ g +++r++vCskeg r+++ mrna32690.1-v1.0-hybrid 150 FYSFYSLAMGFSFRKEKLDKN-IYGIVVRRQLVCSKEGARKKKG 192 ******************999.8899**************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.6E-6 | 150 | 192 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MGWPLEAASG SSTREAMELA EESEGMGDGG SGGGENAAVE SGKKGSGNSR ILGTALPHST 60 DFVNYSISKV VGFMDDNGLR FSESNYYDSV ENEEVQSEEE DLEDEPEETL VSNSVDTQNC 120 LHYKGKQYED LRYEDLKEVD FESVEEVDTF YSFYSLAMGF SFRKEKLDKN IYGIVVRRQL 180 VCSKEGARKK KGPPKDNPVS HNLGREHPL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna32690.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024165995.1 | 1e-35 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2P6PJF8 | 3e-34 | A0A2P6PJF8_ROSCH; Putative transcription factor FAR family | ||||
TrEMBL | A0A2P6QD18 | 7e-35 | A0A2P6QD18_ROSCH; Putative transcription factor FAR family | ||||
STRING | XP_004308577.1 | 3e-33 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF19973 | 2 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 4e-06 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna32690.1-v1.0-hybrid |