PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna32690.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 210aa    MW: 23219.4 Da    PI: 4.2981
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna32690.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR130.21.5e-09150192245
                     FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeek 45 
                              fY++Y+  +GFs rk+k  k+   g +++r++vCskeg r+++ 
  mrna32690.1-v1.0-hybrid 150 FYSFYSLAMGFSFRKEKLDKN-IYGIVVRRQLVCSKEGARKKKG 192
                              ******************999.8899**************9975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-6150192IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MGWPLEAASG SSTREAMELA EESEGMGDGG SGGGENAAVE SGKKGSGNSR ILGTALPHST  60
DFVNYSISKV VGFMDDNGLR FSESNYYDSV ENEEVQSEEE DLEDEPEETL VSNSVDTQNC  120
LHYKGKQYED LRYEDLKEVD FESVEEVDTF YSFYSLAMGF SFRKEKLDKN IYGIVVRRQL  180
VCSKEGARKK KGPPKDNPVS HNLGREHPL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna32690.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024165995.11e-35protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2P6PJF83e-34A0A2P6PJF8_ROSCH; Putative transcription factor FAR family
TrEMBLA0A2P6QD187e-35A0A2P6QD18_ROSCH; Putative transcription factor FAR family
STRINGXP_004308577.13e-33(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1997325
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.14e-06FAR1 family protein