PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna32611.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | MYB | ||||||||
Protein Properties | Length: 577aa MW: 65024 Da PI: 6.3177 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.9 | 2e-07 | 14 | 49 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++ Ed++l+d+vk++G +gR++k++++rw++yl mrna32611.1-v1.0-hybrid 14 KGKWSAGEDQILKDYVKKHG------------LGRCGKSVRLRWFNYL 49 79******************............479***********97 PP | |||||||
2 | Myb_DNA-binding | 38.7 | 2.3e-12 | 59 | 98 | 5 | 46 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++E++l+++ +k+ G++ W++Ia +++ gRt++++k++w + mrna32611.1-v1.0-hybrid 59 REDEEDLIIRMHKLIGKR-WSLIAGRIP-GRTDNEIKNYWIS 98 589***************.*********.***********76 PP | |||||||
3 | Myb_DNA-binding | 38.6 | 2.5e-12 | 380 | 419 | 5 | 46 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++E++l+++ +k+ G++ W++Ia +++ gRt++++k++w + mrna32611.1-v1.0-hybrid 380 REDEEDLIIRMHKLVGKR-WSLIAGRIP-GRTDNEIKNYWIS 419 589***************.*********.***********76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.1E-21 | 11 | 96 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.6E-5 | 13 | 51 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.1E-6 | 14 | 49 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.2E-13 | 15 | 56 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.647 | 50 | 104 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-11 | 54 | 102 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-20 | 57 | 104 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.08E-8 | 60 | 100 | No hit | No description |
Pfam | PF00249 | 1.2E-10 | 60 | 98 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 4.252 | 335 | 370 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-10 | 341 | 377 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.27E-17 | 356 | 426 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.173 | 371 | 425 | IPR017930 | Myb domain |
SMART | SM00717 | 4.0E-12 | 375 | 423 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-20 | 378 | 425 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.38E-9 | 381 | 421 | No hit | No description |
Pfam | PF00249 | 1.2E-10 | 381 | 419 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 577 aa Download sequence Send to blast |
MGKTSGFEKE GKKKGKWSAG EDQILKDYVK KHGLGRCGKS VRLRWFNYLR PDIKHGNIRE 60 DEEDLIIRMH KLIGKRWSLI AGRIPGRTDN EIKNYWISTL SKKLAEEKRK KPEVPRNGIA 120 KESLPAPIEI DDGHPHPTKC NEVPGGGGLV CFASNVNVEE DHQHQSRDTD NSTTMSAGVG 180 VQIRGVANNV QPTGDDLNDD AMPWNDWITD LNEGQLDLSE FLQTDFSNFW EESDMLMNFE 240 VGGCSTINHE WPNNCVVKYH PELLVFLSVR TSVPFYGADF RPFTTVRRRR GRASTPADSS 300 SFPDHFPSPM SPPNSNFPTR LTLFEVLSDL AGKLEFGGLT GDGKWSGKLL ESAGLGRCGR 360 SVRLRWLNYL RPDIKHGNIR EDEEDLIIRM HKLVGKRWSL IAGRIPGRTD NEIKNYWIST 420 LSKKLAEEKR KKPKVPRNET AEESLPSPIE VDDGHPYPTK CNEVPGGGGG LMCFASNVNV 480 EEDHQHQRRD TNNSTTMSAG MGVRIRGVAN NVQPNGDDLS YDPVPWNDWI MDLNGGQLDI 540 SEFLQTGFFN FWEELDMFMN FEVGGCSTIN HEWQNN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-19 | 14 | 425 | 7 | 108 | B-MYB |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna32611.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004289469.1 | 0.0 | PREDICTED: transcription factor WER-like | ||||
TrEMBL | A0A2P6Q722 | 1e-111 | A0A2P6Q722_ROSCH; Putative transcription factor MYB-HB-like family | ||||
STRING | XP_004289469.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF25744 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14750.1 | 1e-36 | myb domain protein 66 |
Link Out ? help Back to Top | |
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Phytozome | mrna32611.1-v1.0-hybrid |