PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna32536.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 568aa    MW: 64031.2 Da    PI: 8.6185
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna32536.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.53.5e-06414458554
                              HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              h ++Er RR++ +++++ L +llP+      +K +K  i++ A+  I +L
  mrna32536.1-v1.0-hybrid 414 HMINERMRREKQKQGYFALHSLLPNG-----TKSDKNWIVQVATTTIEQL 458
                              7799********************97.....6888888999999888888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF534745.3E-244122IPR029058Alpha/Beta hydrolase fold
Gene3DG3DSA:3.40.50.18203.8E-194120IPR029058Alpha/Beta hydrolase fold
PfamPF121462.5E-832218IPR022742Serine aminopeptidase, S33
Gene3DG3DSA:3.40.50.18203.8E-19191251IPR029058Alpha/Beta hydrolase fold
SuperFamilySSF534745.3E-24194262IPR029058Alpha/Beta hydrolase fold
SuperFamilySSF474596.8E-11403469IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.207409458IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.54E-5413461No hitNo description
Gene3DG3DSA:4.10.280.101.5E-7414473IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-4415464IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MPRDDASPIL MVLPGLTSDS NSSYIRHLTC NTSKLLGWNV VVSNHRGLGG VPITSDFIYT  60
CGWTNDVREV TNHLHHRHPN APLFIVGTSI GANILVKYLG EDGENVPVSG AAAICCPWDF  120
LVGDRFIRRT LLQRLYDKAL TLGLQWYSEQ HRHSYSRLSD WEGKMHSIRH YHKTCDVGKF  180
ETVDAFYRRN SSAIYVCNVS VPLLCINALD DPLCTAEAIP WDECRENVNV VLATTTHGSH  240
LAYFERITAS GIWWVRAVDE FFSVLNCSEF KHKQKDLGAE STLDSTLDHD HSSPNLMVAL  300
VKVVALVKLV ALVKAGSRTT QRAKNKKMDQ FIREALEGDF LCYENPPVLM NPSAFVPYSD  360
QRAPRLGNKP PYPGSNSMNV SKRMVQFLRN SCPSSTAKTD AGEKEHGKEK GFRHMINERM  420
RREKQKQGYF ALHSLLPNGT KSDKNWIVQV ATTTIEQLER QKDELRKRNM ELESILCNQR  480
LVKWSRIRLR VANPTSGVDS MMEVLKCLKS LGLKTRNIQS SFSPYEFSAE VEIESKIGGA  540
VVEAAMQETL HEVERKLLSS FPHLPGR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna32536.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004289476.10.0PREDICTED: abhydrolase domain-containing protein 3-like
TrEMBLA0A498HP551e-158A0A498HP55_MALDO; Uncharacterized protein
STRINGXP_004289476.10.0(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.11e-39bHLH family protein