PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna32536.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | bHLH | ||||||||
Protein Properties | Length: 568aa MW: 64031.2 Da PI: 8.6185 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 18.5 | 3.5e-06 | 414 | 458 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h ++Er RR++ +++++ L +llP+ +K +K i++ A+ I +L mrna32536.1-v1.0-hybrid 414 HMINERMRREKQKQGYFALHSLLPNG-----TKSDKNWIVQVATTTIEQL 458 7799********************97.....6888888999999888888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF53474 | 5.3E-24 | 4 | 122 | IPR029058 | Alpha/Beta hydrolase fold |
Gene3D | G3DSA:3.40.50.1820 | 3.8E-19 | 4 | 120 | IPR029058 | Alpha/Beta hydrolase fold |
Pfam | PF12146 | 2.5E-8 | 32 | 218 | IPR022742 | Serine aminopeptidase, S33 |
Gene3D | G3DSA:3.40.50.1820 | 3.8E-19 | 191 | 251 | IPR029058 | Alpha/Beta hydrolase fold |
SuperFamily | SSF53474 | 5.3E-24 | 194 | 262 | IPR029058 | Alpha/Beta hydrolase fold |
SuperFamily | SSF47459 | 6.8E-11 | 403 | 469 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.207 | 409 | 458 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.54E-5 | 413 | 461 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.5E-7 | 414 | 473 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.6E-4 | 415 | 464 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 568 aa Download sequence Send to blast |
MPRDDASPIL MVLPGLTSDS NSSYIRHLTC NTSKLLGWNV VVSNHRGLGG VPITSDFIYT 60 CGWTNDVREV TNHLHHRHPN APLFIVGTSI GANILVKYLG EDGENVPVSG AAAICCPWDF 120 LVGDRFIRRT LLQRLYDKAL TLGLQWYSEQ HRHSYSRLSD WEGKMHSIRH YHKTCDVGKF 180 ETVDAFYRRN SSAIYVCNVS VPLLCINALD DPLCTAEAIP WDECRENVNV VLATTTHGSH 240 LAYFERITAS GIWWVRAVDE FFSVLNCSEF KHKQKDLGAE STLDSTLDHD HSSPNLMVAL 300 VKVVALVKLV ALVKAGSRTT QRAKNKKMDQ FIREALEGDF LCYENPPVLM NPSAFVPYSD 360 QRAPRLGNKP PYPGSNSMNV SKRMVQFLRN SCPSSTAKTD AGEKEHGKEK GFRHMINERM 420 RREKQKQGYF ALHSLLPNGT KSDKNWIVQV ATTTIEQLER QKDELRKRNM ELESILCNQR 480 LVKWSRIRLR VANPTSGVDS MMEVLKCLKS LGLKTRNIQS SFSPYEFSAE VEIESKIGGA 540 VVEAAMQETL HEVERKLLSS FPHLPGR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna32536.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004289476.1 | 0.0 | PREDICTED: abhydrolase domain-containing protein 3-like | ||||
TrEMBL | A0A498HP55 | 1e-158 | A0A498HP55_MALDO; Uncharacterized protein | ||||
STRING | XP_004289476.1 | 0.0 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43650.1 | 1e-39 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna32536.1-v1.0-hybrid |