PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna32530.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 185aa    MW: 21033.9 Da    PI: 6.2767
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna32530.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000152951123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             y+C+ C++ F++   L  H++ H
  mrna32530.1-v1.0-hybrid 29 YECTFCKRGFTNAQALGGHMNIH 51
                             99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.5E-61355IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.61E-72555No hitNo description
SMARTSM003550.00972951IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.4682956IPR007087Zinc finger, C2H2
PROSITE patternPS0002803151IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MESWTVPLSP ETSSDEERDE NSGTAKRSYE CTFCKRGFTN AQALGGHMNI HRKDRAKAKQ  60
LSNQYRSNED YVSMSASQFS TPIYTQPASG YYPVLGHHEH HVQRNYHQMC YQPSESSPRF  120
YSSMDDDSMS SQSSVSHHVN QELWGANLSL RFSPAGRMED DDFRMGVRNH EEVDLELRLG  180
HGGF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna32530.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004288458.11e-138PREDICTED: transcriptional regulator TAC1-like
TrEMBLA0A2P6QQI01e-114A0A2P6QQI0_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004288458.11e-137(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16863073
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.12e-17C2H2 family protein