PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna32526.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Dof

Protein Properties

Length: 422aa MW: 46679.4 Da PI: 5.9484

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna32526.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.7	1.1e-37	36	92	6	62
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +cprC s+ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rkn++s+ mrna32526.1-v1.0-hybrid 36 PNCPRCASSNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRSR 92 58***************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-27	28	90	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.668	36	90	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.3E-32	36	90	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	38	74	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence Send to blast
MFTAPVLEQM LQCQSGQPLI MNSQKPSWKP HVEIAPNCPR CASSNTKFCY YNNYSLSQPR 60 YFCKGCRRYW TKGGSLRNVP VGGGCRKNRR SRSARLSQAD RISMSYYRRN SSSSSGDDLS 120 EQHSKEGANG SDIDMAAVFA NFLNQNSCNG HDPNLVGSES IPDDVHEANA LSDHSQNSLN 180 PAEDLLESVE LLQGLVLPDH DHQQSHEEDN IHNVMGNHQY HQDLSIHEFG LQGLLDDEDV 240 FWSDTTASLT SSTTSFNWQE LDNSFPSDDD DHMKIPTTTT NLCSDNWSSF DFSGLGFQIP 300 TSAPSYGADF PPFATIRCRR GRASTPADSS SFPDLFPSPT SPPNSSFSGR LTLFEVLGDL 360 AGKLEFGGLA RDGKRSGKLL KSARVEARPH RCHTVVKEET STWCGRPHQI TSIYNNLIPL 420 D*

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence Send to blast

MFTAPVLEQM LQCQSGQPLI MNSQKPSWKP HVEIAPNCPR CASSNTKFCY YNNYSLSQPR  60
YFCKGCRRYW TKGGSLRNVP VGGGCRKNRR SRSARLSQAD RISMSYYRRN SSSSSGDDLS  120
EQHSKEGANG SDIDMAAVFA NFLNQNSCNG HDPNLVGSES IPDDVHEANA LSDHSQNSLN  180
PAEDLLESVE LLQGLVLPDH DHQQSHEEDN IHNVMGNHQY HQDLSIHEFG LQGLLDDEDV  240
FWSDTTASLT SSTTSFNWQE LDNSFPSDDD DHMKIPTTTT NLCSDNWSSF DFSGLGFQIP  300
TSAPSYGADF PPFATIRCRR GRASTPADSS SFPDLFPSPT SPPNSSFSGR LTLFEVLGDL  360
AGKLEFGGLA RDGKRSGKLL KSARVEARPH RCHTVVKEET STWCGRPHQI TSIYNNLIPL  420
D*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna32526.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004292540.1	0.0	PREDICTED: dof zinc finger protein DOF1.2
TrEMBL	A0A1D6WJM1	0.0	A0A1D6WJM1_FRAAN; ZnF-Dof-type transcription factor
STRING	XP_004292540.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1817	33	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21340.1	1e-43	Dof family protein

Link Out ? help Back to Top
Phytozome	mrna32526.1-v1.0-hybrid