PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna32416.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HSF
Protein Properties Length: 465aa    MW: 51134.3 Da    PI: 4.8055
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna32416.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1154.7e-361382292102
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 
                              Fl+k+ye+++d+e +++iswse g++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ Fk
  mrna32416.1-v1.0-hybrid 138 FLTKTYELVDDPEADDMISWSEGGSTFVVWRPAEFARDILPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDCFK 214
                              9*****************************************************************99.........********* PP

                              XXXXXXXXXXXXXXX CS
             HSF_DNA-bind  88 kgkkellekikrkks 102
                              +g+k ll++i+r+k 
  mrna32416.1-v1.0-hybrid 215 RGEKGLLREIQRRKI 229
                              ************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.0E-57134227IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.99E-35135227IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.108.1E-38135227IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.5E-31138227IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-20138161IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-20176188IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340177201IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-20189201IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MADTRSKFKP IKMEEWERTF WKRRWEEEPY SPTIPFFSED SPQSPIFHSP PPREPSRNNT  60
SSLPPLALCF SSPSNLIRIV IIQRVVETRI LVNFFAKVLC GSETRGERSM ASLPDQNGDS  120
GPGGGGGRES QRTIPTPFLT KTYELVDDPE ADDMISWSEG GSTFVVWRPA EFARDILPKY  180
FKHNNFSSFV RQLNTYGFRK VVPDRWEFAN DCFKRGEKGL LREIQRRKIS PSVSASAATV  240
AAAAAVTAAV LPVAAVSVSP ANSGDEQVIS SNSSPMAVPT PAPAVTLLQR ARSCNSTAEI  300
LEENERLRKE NMQLSNELTQ LRGLCNNILG MMTNYASGQL ARGGGAVADD KPPPPPLHSV  360
KISQGGENAA VSGGDMAGDS AEEDEMEEDQ EEETPLPLAL PLRPIPTAKL FGVSLGVKRP  420
RRDEEEEGED QERQNQGCDE VVKQEPSDGS SKLEKEGTWL ELRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-2713823220125Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna32416.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004300764.10.0PREDICTED: heat stress transcription factor B-2b
RefseqXP_011463820.10.0PREDICTED: heat stress transcription factor B-2b
RefseqXP_011463821.10.0PREDICTED: heat stress transcription factor B-2b
RefseqXP_011463822.10.0PREDICTED: heat stress transcription factor B-2b
RefseqXP_011463823.10.0PREDICTED: heat stress transcription factor B-2b
SwissprotQ9T0D37e-83HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A1B0VC600.0A0A1B0VC60_FRAVE; Heat shock factor B2b
STRINGXP_004300764.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.13e-72HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]