PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna32389.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 655aa    MW: 72590.6 Da    PI: 5.4387
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna32389.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS407.11.7e-1242696382374
                     GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                               +lL +c ea+  ++ +++++++a+l elasp+g+++ Rl+ay+teALa r++r +++++++ pp+e + +  +e+ +a++l+++v
  mrna32389.1-v1.0-hybrid 269 LSLLNACIEAIGMKNIAAINHFIAKLGELASPKGSAISRLTAYYTEALALRVTRLWPHVFQISPPREFD-RGDDESGTAMRLLNQV 353
                              689****************************************************************98.567888899******* PP

                     GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelg 173
                              sPi+kf h+t N+ +l+a+eg++rvHiiDfdi+ GlQWp+L+q+LasR+++p ++RiTgvg+    sk+el+etg+rLa fA +l+
  mrna32389.1-v1.0-hybrid 354 SPIPKFLHFTSNEILLRAFEGKDRVHIIDFDIKLGLQWPSLFQSLASRTNPPSHVRITGVGE----SKQELNETGDRLAGFAGALN 435
                              **************************************************************....******************** PP

                     GRAS 174 vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                              +pfef++ v++rled++l++L+vk++E++aVn+++qlh++l +++  +   +++L l++s++P++v ++eqea+hn++++ +r+++
  mrna32389.1-v1.0-hybrid 436 LPFEFHP-VVDRLEDVRLWMLHVKEQESVAVNCAFQLHKTLYDTTGGAF--RDFLGLIRSTNPTIVLMAEQEAEHNEPRLEARVSN 518
                              *******.7********************************77766665..89********************************* PP

                     GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk 345
                              +l+yysa+fd + ++lp +s +rikvE   ++rei+n+vaceg++r erhe +ekWr+ +e+ GF+   +++++  q + ll++++
  mrna32389.1-v1.0-hybrid 519 SLRYYSAIFDLIGSSLPLDSPARIKVEDT-VAREIRNIVACEGSDRLERHEGFEKWRMLMEQGGFRCNGITDREFLQSQFLLKMYE 603
                              ****************************9.9******************************************************* PP

                     GRAS 346 sdgyrveee......sgslvlgWkdrpLvsvSaWr 374
                               + y+v+++       ++l+l W+d+pL++vSaW+
  mrna32389.1-v1.0-hybrid 604 CENYSVKKQgqrhegPAALTLSWMDQPLYTVSAWT 638
                              999****6666665567888**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.315242612IPR005202Transcription factor GRAS
PfamPF035145.8E-122269638IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MLAGCSSSTL LSPRHRLRTE AAAQLQACHF QLPSMSTQRL DLPCSFPRKD SSRSQPIRPV  60
GLSVEKTSID SKTSTCSLKQ SIRLPPLATS RPAATIQAEV KDQFWEKRGK GLKRFAEVED  120
EEDEDESIRN RVKRKRCSSE NDLSLGELGG GSFWFQPGFH VPRSVQAITG IDPPQFPYTF  180
PNNPWLQSVV TEITDLKDGE TSHAPVGEPS GDSSTSSGSQ SLGLRVNESV SEPEGVVGSG  240
HGHNPYGDAG VEAEDEEESE VEQQGFELLS LLNACIEAIG MKNIAAINHF IAKLGELASP  300
KGSAISRLTA YYTEALALRV TRLWPHVFQI SPPREFDRGD DESGTAMRLL NQVSPIPKFL  360
HFTSNEILLR AFEGKDRVHI IDFDIKLGLQ WPSLFQSLAS RTNPPSHVRI TGVGESKQEL  420
NETGDRLAGF AGALNLPFEF HPVVDRLEDV RLWMLHVKEQ ESVAVNCAFQ LHKTLYDTTG  480
GAFRDFLGLI RSTNPTIVLM AEQEAEHNEP RLEARVSNSL RYYSAIFDLI GSSLPLDSPA  540
RIKVEDTVAR EIRNIVACEG SDRLERHEGF EKWRMLMEQG GFRCNGITDR EFLQSQFLLK  600
MYECENYSVK KQGQRHEGPA ALTLSWMDQP LYTVSAWTPV DVAGGSSSSF SQPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-692506391380Protein SCARECROW
5b3h_A1e-6827563925379Protein SCARECROW
5b3h_D1e-6827563925379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna32389.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004298743.10.0PREDICTED: scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A2P6P7B80.0A0A2P6P7B8_ROSCH; Putative transcription factor GRAS family
STRINGXP_004298743.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91613244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein