PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna32380.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

ERF

Protein Properties

Length: 280aa MW: 29906.7 Da PI: 4.4474

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna32380.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	49.8	8.6e-16	99	148	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+G+r + +Wv+eIr+p++ +kr++lg+f t+e+Aa+a++ a+++l+ mrna32380.1-v1.0-hybrid 99 PRYRGIRCR--GEKWVSEIREPRK---TKRIWLGTFPTPEMAAAAYDVAALALKR 148 68**954..58****843...5*********************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.27E-13	99	156	No hit	No description
Pfam	PF00847	2.0E-9	99	148	IPR001471	AP2/ERF domain
SMART	SM00380	5.2E-24	100	162	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	19.111	100	156	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.88E-17	100	157	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	1.2E-24	100	156	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0009005	anatomy	root
PO:0007134	developmental stage	sporophyte vegetative stage

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MADPNTPANN LRQMIEDQPA PTQLITLDFP PPPPSPTLPQ PPQPPPPPPS HSLALLPLVI 60 PPTSEATVVQ QLQLETPKEA TAQQGKSTPM ASSSSGKHPR YRGIRCRGEK WVSEIREPRK 120 TKRIWLGTFP TPEMAAAAYD VAALALKRED AILNFPGSIK SYPVPASMSA LDIRAAATAA 180 ATAAAAETTL KTSGSRESTP SSVGQQQKEY DDMLSINSSA LASSVGADFM DEEEIFGMPN 240 LLVDMAEGML VSPPRINSPP SDYDSPEYSD GGESLWNYD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-12	98	156	12	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna32380.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011463809.1	0.0	PREDICTED: ethylene-responsive transcription factor ERF027-like
Swissprot	Q9FJ90	4e-45	ERF25_ARATH; Ethylene-responsive transcription factor ERF025
Swissprot	Q9SJR0	3e-45	ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBL	A0A3Q8TED3	0.0	A0A3Q8TED3_FRAAN; Transcription factor ERF17
STRING	XP_004298779.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF562	32	144

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52020.1	6e-41	ERF family protein

Link Out ? help Back to Top
Phytozome	mrna32380.1-v1.0-hybrid

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]