PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | mrna32378.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 257aa MW: 28817.7 Da PI: 4.9734 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.1 | 1e-18 | 73 | 123 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +++Wv+e+r+p +k++r++lg++ tae+Aa+a++ a+++l+g mrna32378.1-v1.0-hybrid 73 PVYRGVRRRN-NNKWVCEVREP---NKKTRIWLGTYPTAEMAARAHDVAALALRG 123 68*****887.8******9998...347*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.1E-14 | 73 | 123 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-31 | 74 | 133 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-21 | 74 | 133 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.8E-27 | 74 | 137 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.102 | 74 | 131 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.1E-8 | 75 | 86 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.19E-30 | 75 | 133 | No hit | No description |
PRINTS | PR00367 | 7.1E-8 | 97 | 113 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0010371 | Biological Process | regulation of gibberellin biosynthetic process | ||||
GO:0016049 | Biological Process | cell growth | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0050826 | Biological Process | response to freezing | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 257 aa Download sequence Send to blast |
MNSSTSQQQL SDSNLQQQPL DSSSSIDKPE SSSFSDASVT NRRSAHSDEE VILASSRPKK 60 RAGRRVFKET RHPVYRGVRR RNNNKWVCEV REPNKKTRIW LGTYPTAEMA ARAHDVAALA 120 LRGKQACLNF ADSAWRLPVP ASKDQLDIRR AAAEAAETFR PQEFGGVSSS CEDDYYQESN 180 NEADQEVAKI SLDSAEKKNE GFYEDEEAVF DMPRLLTSMA EGLLLSPPRH YMDSINWGDA 240 DDVESEPNFS LWSYSV* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00137 | DAP | Transfer from AT1G12610 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | mrna32378.1-v1.0-hybrid |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004298771.1 | 0.0 | PREDICTED: dehydration-responsive element-binding protein 1E | ||||
Swissprot | Q9LN86 | 2e-68 | DRE1F_ARATH; Dehydration-responsive element-binding protein 1F | ||||
TrEMBL | A0A3S8T923 | 1e-137 | A0A3S8T923_FRAAN; Transcription factor ERF19 | ||||
STRING | XP_004298771.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF243 | 33 | 224 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G25490.1 | 5e-55 | C-repeat/DRE binding factor 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | mrna32378.1-v1.0-hybrid |
Publications ? help Back to Top | |||
---|---|---|---|
|