PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna32346.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 300aa    MW: 33752.6 Da    PI: 9.6213
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna32346.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.72.1e-13125177155
                              CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                              ++ +h  +Er+RR+++ + ++ Lr++lP       ++K s ++ + +A +YIk+Lq
  mrna32346.1-v1.0-hybrid 125 KKIMHRDIERQRRQEMTTLYASLRSHLPLeY---LKGKRSISDHVHQAANYIKHLQ 177
                              5789*************************77...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-14122195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.10E-10122181No hitNo description
PROSITE profilePS5088812.773124176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-10125177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-7125173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.6E-5130182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.8E-4174194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MFPNNSTPPP TLNSPRGGRG AAEKRRCHAP RRGGGGVAAE KRRRRRRRCL EEEEIACVPC  60
VEHKIRENHV YPLPLPLGPS HQKKDHVHLM SPRQIDFSQP KRKTSITFGE IDDDQNPDQE  120
SKKVKKIMHR DIERQRRQEM TTLYASLRSH LPLEYLKGKR SISDHVHQAA NYIKHLQKDL  180
EELREKKDEL KNQSNISGSS TAVVENLQTP SIMGDSVILV RPACTGVEIV VSTPLKQGLP  240
LSRVIGILVS EGLSIVSCNS AKRNQMLIYS LETEVIDGES IDIPELQNRL IEKCTSGFN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12345KRRCHAPRRGGGGVAAEKRRRRR
24045KRRRRR
34147RRRRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna32346.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004300739.11e-179PREDICTED: transcription factor bHLH36
TrEMBLA0A2P6P7I21e-103A0A2P6P7I2_ROSCH; Putative transcription factor bHLH family
STRINGXP_004300739.11e-178(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79233125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.14e-35bHLH family protein