PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna32264.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 672aa    MW: 73750.2 Da    PI: 4.859
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna32264.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding262.1e-08621669247
                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
          Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                              +rW+ +E++ l  +v+++G g+Wk I +      + Rt+ ++k++w++ 
  mrna32264.1-v1.0-hybrid 621 KRWSLQEEDMLRTCVQKYGIGRWKCILEAHRdvfEDRTEVDLKDKWRNM 669
                              69***************************999***************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.366615671IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.9E-11616671IPR009057Homeodomain-like
SuperFamilySSF466895.23E-14617670IPR009057Homeodomain-like
CDDcd116603.46E-16621671No hitNo description
PfamPF002493.3E-6621669IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MDSDVDVSRW VLELLLRERN CDKRVLAVLP ISDDDGRLKK TLLLRAIESE ILDGAAVTET  60
ILDSLESIEV LDRGQGVPIT DSMRAAYCAV ATELTVKFLV CSGGKEPGGK YVEAVDKIWR  120
GRVRVLEERE GCGLVSAELK ERRDEVEAGI RDIEVSKRLA SLDTRNDALR LVAAYVEEAL  180
ALLGPPFIAW AVRYSIGKEF GGEQVAVEND GNVGKGCEVP VRVANGAEVA VPMANGVDLG  240
VNGADNNSEA QMVNGANDVT NGSELGVPRT DVAKVSNVSE QEAHDATDKS EQEVPRTNEV  300
NVSSISEQEA RDTNVGDESG SQVVTVSYFN SRSNMDPHMN GVQVQVVGAR RSPPNENCGV  360
LSFEPATKET ETPRTTTVRR RHGPAKIRDD EDVGTVASVG IYDSVSSAEV RKVQELKSDV  420
GTEASVGIYN SVSSAEVRKV QEELKSGVLD LQAVVTKPLP HVLHVSEMVR SRLGMRPVDH  480
VSGENKSAAN PSVEKNAEPD QFNDDNHGDQ TSHQNDVPQP IGKESCAPNL SVDKGKGTEN  540
DQTGDVKRGN PSCSSQNNVP RAGLMERNST SHTYEWDDSL GMSPELTYSK GRFHLPSLKR  600
NAFSPLKEYE DERFPKRRKN KRWSLQEEDM LRTCVQKYGI GRWKCILEAH RDVFEDRTEV  660
DLKDKWRNMT K*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00052PBMTransfer from AT1G15720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna32264.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004298675.20.0PREDICTED: uncharacterized protein LOC101294557 isoform X1
TrEMBLA0A2P6Q2380.0A0A2P6Q238_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004294731.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28243260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.15e-09TRF-like 5