PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna32254.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NAC | ||||||||
Protein Properties | Length: 371aa MW: 42951 Da PI: 7.2403 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 173.6 | 5.7e-54 | 19 | 144 | 1 | 125 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyW 83 +ppGfrFhPtdeelv++yL+kk+++kk++l +vi++vd+yk+ePwdL++ k+ + +++ewyfFs++dkky+tg+r+nratk+g+W mrna32254.1-v1.0-hybrid 19 VPPGFRFHPTDEELVDYYLRKKIASKKIDL-DVIRDVDLYKIEPWDLQElcKIGSeDQNEWYFFSHKDKKYPTGTRTNRATKAGFW 103 69****************************.9***************954555552455*************************** PP NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmhe 125 katg+dk+++ +++lvg++ktLvfykgrap+g+k+dW+mhe mrna32254.1-v1.0-hybrid 104 KATGRDKAIYI-RHNLVGMRKTLVFYKGRAPNGQKSDWIMHE 144 ***********.899**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-53 | 15 | 144 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 50.402 | 19 | 168 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-26 | 20 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048759 | Biological Process | xylem vessel member cell differentiation | ||||
GO:1901348 | Biological Process | positive regulation of secondary cell wall biogenesis | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MSLTTLRRRL KNMNTFSHVP PGFRFHPTDE ELVDYYLRKK IASKKIDLDV IRDVDLYKIE 60 PWDLQELCKI GSEDQNEWYF FSHKDKKYPT GTRTNRATKA GFWKATGRDK AIYIRHNLVG 120 MRKTLVFYKG RAPNGQKSDW IMHEVFKKRL ATVRRMGDYE SPCWYDQSSS FMPELDSPRT 180 NMFPNPAYTT TSSSSSYHQQ LYSNCKQELD HHLQYNAIPV PPHPDSFLQL PQLESPKVAQ 240 YGTYDHHLRN NGCHVMPSST FRPEEQVQQM NQHNLMINSS PLLYNDNSLD DQLTDWRVLD 300 KFVASQLSHD QQEASKETTA NYSNEAVFDP VGDEVHTSMG ANESKRPENI IAQDYAASTS 360 TSSCQIDLWK * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-46 | 8 | 144 | 4 | 137 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00136 | DAP | Transfer from AT1G12260 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna32254.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004298666.1 | 0.0 | PREDICTED: NAC domain-containing protein 7 | ||||
Swissprot | Q9FWX2 | 1e-127 | NAC7_ARATH; NAC domain-containing protein 7 | ||||
TrEMBL | A0A251LEQ3 | 1e-153 | A0A251LEQ3_MANES; Uncharacterized protein | ||||
TrEMBL | A0A251P556 | 1e-152 | A0A251P556_PRUPE; Uncharacterized protein | ||||
STRING | XP_004298666.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1269 | 33 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12260.1 | 1e-128 | NAC 007 |
Link Out ? help Back to Top | |
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Phytozome | mrna32254.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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