PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna32254.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 371aa    MW: 42951 Da    PI: 7.2403
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna32254.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.65.7e-54191441125
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyW 83 
                              +ppGfrFhPtdeelv++yL+kk+++kk++l +vi++vd+yk+ePwdL++  k+ + +++ewyfFs++dkky+tg+r+nratk+g+W
  mrna32254.1-v1.0-hybrid  19 VPPGFRFHPTDEELVDYYLRKKIASKKIDL-DVIRDVDLYKIEPWDLQElcKIGSeDQNEWYFFSHKDKKYPTGTRTNRATKAGFW 103
                              69****************************.9***************954555552455*************************** PP

                      NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmhe 125
                              katg+dk+++  +++lvg++ktLvfykgrap+g+k+dW+mhe
  mrna32254.1-v1.0-hybrid 104 KATGRDKAIYI-RHNLVGMRKTLVFYKGRAPNGQKSDWIMHE 144
                              ***********.899**************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-5315144IPR003441NAC domain
PROSITE profilePS5100550.40219168IPR003441NAC domain
PfamPF023652.3E-2620144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048759Biological Processxylem vessel member cell differentiation
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MSLTTLRRRL KNMNTFSHVP PGFRFHPTDE ELVDYYLRKK IASKKIDLDV IRDVDLYKIE  60
PWDLQELCKI GSEDQNEWYF FSHKDKKYPT GTRTNRATKA GFWKATGRDK AIYIRHNLVG  120
MRKTLVFYKG RAPNGQKSDW IMHEVFKKRL ATVRRMGDYE SPCWYDQSSS FMPELDSPRT  180
NMFPNPAYTT TSSSSSYHQQ LYSNCKQELD HHLQYNAIPV PPHPDSFLQL PQLESPKVAQ  240
YGTYDHHLRN NGCHVMPSST FRPEEQVQQM NQHNLMINSS PLLYNDNSLD DQLTDWRVLD  300
KFVASQLSHD QQEASKETTA NYSNEAVFDP VGDEVHTSMG ANESKRPENI IAQDYAASTS  360
TSSCQIDLWK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-4681444137Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00136DAPTransfer from AT1G12260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna32254.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004298666.10.0PREDICTED: NAC domain-containing protein 7
SwissprotQ9FWX21e-127NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A251LEQ31e-153A0A251LEQ3_MANES; Uncharacterized protein
TrEMBLA0A251P5561e-152A0A251P556_PRUPE; Uncharacterized protein
STRINGXP_004298666.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126933106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-128NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]