PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna32207.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family TALE
Protein Properties Length: 934aa    MW: 103801 Da    PI: 7.7429
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna32207.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.74e-082693032155
                              HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                 Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                              k +yp++ ++  LA+ +gL+++q+ +WF N+R ++
  mrna32207.1-v1.0-hybrid 269 KWPYPTEVDKMTLAQVTGLDQKQINNWFINQRKRH 303
                              679*****************************885 PP
2ELK37.84.1e-13223244122
                      ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                              ELK+ LlrKYsgy+++LkqEFs
  mrna32207.1-v1.0-hybrid 223 ELKDKLLRKYSGYISTLKQEFS 244
                              9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012555.4E-2084128IPR005540KNOX1
PfamPF037902.5E-1988127IPR005540KNOX1
SMARTSM012564.7E-24135186IPR005541KNOX2
PfamPF037915.2E-22139184IPR005541KNOX2
PROSITE profilePS5121311.086223243IPR005539ELK domain
PfamPF037891.5E-10223244IPR005539ELK domain
SMARTSM011887.1E-8223244IPR005539ELK domain
PROSITE profilePS5007112.163243306IPR001356Homeobox domain
SMARTSM003891.0E-11245310IPR001356Homeobox domain
SuperFamilySSF466893.55E-18245315IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-26248307IPR009057Homeodomain-like
CDDcd000864.09E-11255307No hitNo description
PfamPF059205.7E-16263302IPR008422Homeobox KN domain
PROSITE patternPS000270281304IPR017970Homeobox, conserved site
PROSITE profilePS5147314.479385490IPR002902Gnk2-homologous domain
PfamPF016572.8E-11399487IPR002902Gnk2-homologous domain
SuperFamilySSF561127.55E-75510799IPR011009Protein kinase-like domain
Gene3DG3DSA:2.60.120.2001.4E-5516545IPR013320Concanavalin A-like lectin/glucanase domain
SMARTSM002203.2E-28532799IPR000719Protein kinase domain
PROSITE profilePS5001136.033532807IPR000719Protein kinase domain
PfamPF077141.8E-44534799IPR001245Serine-threonine/tyrosine-protein kinase catalytic domain
CDDcd140662.20E-87538800No hitNo description
Gene3DG3DSA:3.30.200.203.7E-21546608No hitNo description
Gene3DG3DSA:1.10.510.101.8E-45609803No hitNo description
PROSITE patternPS001080652664IPR008271Serine/threonine-protein kinase, active site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0005634Cellular Componentnucleus
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007027developmental stagewhole plant fruit formation stage 70% to final size
Sequence ? help Back to Top
Protein Sequence    Length: 934 aa     Download sequence    Send to blast
MEELYGFSTG NSDHYYSSSS MAMPPEHLPL SEYYTSFEPL SAVVPGSSSD PVYYYSGSNS  60
STVSDCVSVA VAGNQRGGEE VSCTDFNAKI ASHPLYPNLL QAYIDCQKVG APPELAHILE  120
KIRRESDQLS RRTVGSTCMG VDPELDEFME TYCGILLKYK SDLTKPFNEA ITFLNSMETQ  180
LNNLAGANTN DAPPGNSSDY EDMSGGEIDV QDSDHQQRNV NHELKDKLLR KYSGYISTLK  240
QEFSQKKKKG KLPKDAKQIL ADWWNLHYKW PYPTEVDKMT LAQVTGLDQK QINNWFINQR  300
KRHWKPSENM QFAVMESLYD PQTSEAGQFC GNSTHTSDSN FIPNFTDAIT KLPKCLPSTS  360
ARIYLDGCFL AYDDHDFSGE ALHEYPKHVT CGTPVDLSKY NYMEGFNSKV MDVIGNVTEK  420
AVGNEGFAVV GQRGGVESVY VLAQCWRTMG EKGCRDCLEV AGKNLRGCLP GKQGRAMLAG  480
CYMRYSTEKF FDVQEDELNG NVTSAPVGTS KSQHKNRLNF KYEMLEKATD FFNASRKLGQ  540
GGAGSVFKGT LPDGSNIAVK RLFFNTRQWA DNFFTEVNLI SGIQHKNLVR LLGCSIEGPE  600
SLLVYEYVPN KSLDKIIFGC SEQVLSWQQR FDIICGIAEG LVYLHDSCSE KIIHRDIKSS  660
NILLDEDLTP KIADFGLAGC VDPDKSHHST GIAGTLGYMA PEYLVRGQLT DKADVYAFGV  720
LVLEIVCGRK NHVFMEGSSS ILNSVYQNYR ANTNTKSVDA ILKSEYPERE ASNVLQIGLL  780
CTQASLALRP SMSEVVQMLT DKESGALKVG LEVGQCGGTL RRCGPSGGSG LSYRNGAFRC  840
RLSAQVTATI AGKYTARPAL GRSGFRQSGS RMNQRRRRRW RVAKTDLHGR PQQGVCTARL  900
KRWARRLEVT HQRAGRSWAL LCRHLGRERD AFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3tl8_A6e-594887997314BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1
3tl8_D6e-594887997314BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1
3tl8_G6e-594887997314BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1
3tl8_H6e-594887997314BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1
3uim_A5e-594907991306BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1
3ulz_A5e-594907991306BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119125EKIRRES
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna32207.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ4137770.0HQ413777.1 Fragaria vesca knotted-like homeobox KNOX4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024174883.10.0LOW QUALITY PROTEIN: cysteine-rich receptor-like protein kinase 1
SwissprotQ9FNE11e-156CRK42_ARATH; Cysteine-rich receptor-like protein kinase 42
TrEMBLA0A2P6P5R60.0A0A2P6P5R6_ROSCH; Uncharacterized protein
STRINGXP_008245018.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.12e-94KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Chen Z
    A superfamily of proteins with novel cysteine-rich repeats.
    Plant Physiol., 2001. 126(2): p. 473-6
    [PMID:11402176]
  2. Chen K,Fan B,Du L,Chen Z
    Activation of hypersensitive cell death by pathogen-induced receptor-like protein kinases from Arabidopsis.
    Plant Mol. Biol., 2004. 56(2): p. 271-83
    [PMID:15604743]
  3. Jamet E, et al.
    Recent advances in plant cell wall proteomics.
    Proteomics, 2008. 8(4): p. 893-908
    [PMID:18210371]
  4. Wrzaczek M, et al.
    Transcriptional regulation of the CRK/DUF26 group of receptor-like protein kinases by ozone and plant hormones in Arabidopsis.
    BMC Plant Biol., 2010. 10: p. 95
    [PMID:20500828]