PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna32198.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB
Protein Properties Length: 500aa    MW: 56421.5 Da    PI: 5.7411
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna32198.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.8e-17221267148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              +g WT +Ed  l+++v+q+G + W+ Ia++++ gR +kqc++rw+++l
  mrna32198.1-v1.0-hybrid 221 KGQWTIDEDRVLIQLVEQYGVRKWSHIAQMLP-GRIGKQCRERWHNHL 267
                              799*****************************.*************97 PP
2Myb_DNA-binding56.75.6e-18275315345
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                               W++eEd++l++a+++ G++ W+ Ia++++ gRt++++k++w+
  mrna32198.1-v1.0-hybrid 275 IWSEEEDKILIQAHAEIGNK-WAEIAKRLP-GRTENSIKNHWN 315
                              6*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129430.072216271IPR017930Myb domain
SuperFamilySSF466891.26E-31218314IPR009057Homeodomain-like
SMARTSM007172.0E-15220269IPR001005SANT/Myb domain
PfamPF002493.7E-16221267IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-27222273IPR009057Homeodomain-like
CDDcd001674.01E-15224267No hitNo description
SMARTSM007174.7E-17272320IPR001005SANT/Myb domain
PROSITE profilePS5129421.072272322IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-22274321IPR009057Homeodomain-like
PfamPF002491.1E-16276315IPR001005SANT/Myb domain
CDDcd001673.54E-14276318No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MELNKLRDNL ASQIPLLVPE NNNSYMMKPY NMKEEFIPFE PSSSSKGYLQ DFHHLDNQFH  60
QYASGSSSNP MLGIQNPCFE PYYNENNNAC YTYDQGSPAD VNFYECKPLI ISENLGHGQV  120
LDNFQSGSSG GGYLNFPNPR SNPIGHMMGI SHRSGTNFLP LTNSQDIKPV SFVVPDEDSC  180
VNSENGYYKR VGMNHKGTSR LSTISRAGST FKGRKKNNVV KGQWTIDEDR VLIQLVEQYG  240
VRKWSHIAQM LPGRIGKQCR ERWHNHLRPD IKKDIWSEEE DKILIQAHAE IGNKWAEIAK  300
RLPGRTENSI KNHWNATKRR QYSKRKCRSR YPRGSLLQDY IKSLNLDAAP NTGRQRKSNN  360
NNSNSSPADH SNATTDSTKV QSQTNVGFNS ENDRLVPNYE FSEEEADFCF DENMFEEGCS  420
IDSLLDDISC ATDFGQNGNG FGKMMGSSAH DPVPVDDEKN VEMLDVHVNL GSTVIESNEV  480
KQELDLVEMM TQVNEADDA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-452193212104C-Myb DNA-Binding Domain
1msf_C2e-452193212104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna32198.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024171467.10.0transcription factor MYB98
SwissprotQ9S7L21e-108MYB98_ARATH; Transcription factor MYB98
TrEMBLA0A2P6P5T70.0A0A2P6P5T7_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004300902.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.11e-106myb domain protein 98
Publications ? help Back to Top
  1. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]