PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna32187.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family Dof
Protein Properties Length: 372aa    MW: 40721.4 Da    PI: 6.9335
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna32187.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.96.1e-4082142262
                   zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                              ++++lkcprCdst+tkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rknkk+ 
  mrna32187.1-v1.0-hybrid  82 HDQSLKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVA 142
                              68999*****************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-2976136IPR003851Zinc finger, Dof-type
PfamPF027011.8E-3383140IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.18986140IPR003851Zinc finger, Dof-type
PROSITE patternPS01361088124IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010067Biological Processprocambium histogenesis
GO:0010087Biological Processphloem or xylem histogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MGPVLGLVQT LWGLTASATD VIWVSSLCLM GHNSLQVCMD SSDWLQGSIH EDQSPMESSS  60
PLSGDILTCS RPLIERRLRP PHDQSLKCPR CDSTHTKFCY YNNYSLSQPR YFCKTCRRYW  120
TKGGTLRNIP VGGGCRKNKK VASKKQNEDH SPSMNPNHLG SSSTSSHHNR TDLQLSFPDQ  180
MQFSHLNNLM LGAQGTGNPS FMDGRYGNIN GMLENSNQLR PIDFMESKLE AIVGNARNYD  240
FMGGGGDSLG IVGGLSNMGG GAHGLESAGF HGFCSSPFGS MSLDHQGNNN GNNFMENCQR  300
LMLPYEANEN HQHHQNEIHD VKPNTKLLSL EWQEQGCSDA GKESSYGYLN ALGSWTGVMN  360
NFGPSATNSL V*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Promotes expression (PubMed:19915089). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). Involved in the regulation of interfascicular cambium formation and vascular tissue development, particularly at a very early stage during inflorescence stem development; promotes both cambium activity and phloem specification, but prevents xylem specification (PubMed:19915089). {ECO:0000250|UniProtKB:Q9M2U1, ECO:0000269|PubMed:19915089, ECO:0000269|PubMed:30626969}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00580DAPTransfer from AT5G62940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna32187.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004298945.10.0PREDICTED: dof zinc finger protein DOF5.6
SwissprotQ9FM034e-58DOF56_ARATH; Dof zinc finger protein DOF5.6
TrEMBLA0A2P6P5X50.0A0A2P6P5X5_ROSCH; Putative transcription factor C2C2-Dof family
STRINGXP_004298945.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50923456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62940.14e-57Dof family protein
Publications ? help Back to Top
  1. Miyashima S, et al.
    Mobile PEAR transcription factors integrate positional cues to prime cambial growth.
    Nature, 2019. 565(7740): p. 490-494
    [PMID:30626969]