PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna32155.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 225aa MW: 25677.5 Da PI: 9.1123 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 59.9 | 3.1e-19 | 10 | 46 | 15 | 51 |
HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 kR +++lKKA+ELS+LCdaevavi f s+gkl+eyss mrna32155.1-v1.0-hybrid 10 KRHATLLKKAQELSILCDAEVAVIAFTSDGKLHEYSS 46 9**********************************96 PP | |||||||
2 | K-box | 21.3 | 1.2e-08 | 79 | 166 | 7 | 93 |
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe.en 91 + +e++ +s+++ l Lk + L+ + ++ G+ L+ Ls +eL Leq+ + +l ++ +kK+ell++ +e+ + + +e e+ mrna32155.1-v1.0-hybrid 79 TVSNEEHPKSSDEVLHALKGQHAALKLDKLRRTGKALDGLSREELYALEQEQKGALVSVLKKKEELLVRLLEKKEELLVRSKErEH 164 44566777778888899*********999**************************************9988876544333332033 PP K-box 92 ka 93 +a mrna32155.1-v1.0-hybrid 165 QA 166 33 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.9E-6 | 7 | 47 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.8E-15 | 9 | 44 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.22E-18 | 9 | 67 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 16.357 | 10 | 48 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.4E-13 | 10 | 25 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.4E-13 | 25 | 46 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 7.739 | 86 | 184 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MPETEILGKK RHATLLKKAQ ELSILCDAEV AVIAFTSDGK LHEYSSKRVE HTLSRYKNYT 60 GRRTKMEPDH QLEERRRGTV SNEEHPKSSD EVLHALKGQH AALKLDKLRR TGKALDGLSR 120 EELYALEQEQ KGALVSVLKK KEELLVRLLE KKEELLVRSK EREHQAIQEK EILMRRGFEE 180 RTKEIPCLQL FPENSTGLCT SSKAVALSSS PAQDMDIDIL RLRL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna32155.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004300888.1 | 1e-160 | PREDICTED: truncated transcription factor CAULIFLOWER A-like | ||||
TrEMBL | A0A2P6QDU0 | 3e-94 | A0A2P6QDU0_ROSCH; Putative transcription factor MADS-MIKC family | ||||
STRING | XP_004300888.1 | 1e-159 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF32503 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13790.1 | 4e-17 | AGAMOUS-like 15 |
Link Out ? help Back to Top | |
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Phytozome | mrna32155.1-v1.0-hybrid |